Mercurial > repos > bgruening > hicup_hicup_mapper

annotate test-data/dataset.hicup.sam @ 0:42efdafe339c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
author bgruening
date Thu, 09 Mar 2017 08:32:30 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
1 @HD VN:1.0 SO:unsorted
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
2 @SQ SN:chr1 LN:199950
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
3 @PG ID:bowtie2 PN:bowtie2 VN:2.3.0 CL:"/home/wolffj/miniconda2/envs/hicup/bin/bowtie2-align-s --wrapper basic-0 --very-sensitive -x genome -p 1 - --passthrough"
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
4 @PG ID:HiCUP Mapper VN:0.5.9
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
5 @PG ID:HiCUP Truncater VN:0.5.9 DS:"Restriction enzyme --re1 A^AGCTT"
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
6 @PG ID:HiCUP Filter VN:0.5.9 DS:"Max insert 0 Min insert 0 Digest file digest_file.txt"
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
7 @PG HiCUP Deduplicator VN:0.5.9
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
8 SRR071233.43293 83 chr1 35433 3 40M = 75323 0 GAGTCCAGGAGTTCAAGACCAGCCTGGGTAACATAGTGAG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:-15 XN:i:0 XM:i:3 XO:i:0 XG:i:0 NM:i:3 MD:Z:3G22A1C11 YT:Z:UU CT:Z:FAR
42efdafe339c planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit f70ecd67ac0a08e34c2a6c7742fe7ce7d1456630
bgruening
parents:
diff changeset
9 SRR071233.43293 163 chr1 75323 23 40M = 35433 0 CTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCG CCBCCCCCCBBCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:-10 XN:i:0 XM:i:2 XO:i:0 XG:i:0 NM:i:2 MD:Z:20A18A0 YT:Z:UU CT:Z:FAR