Mercurial > repos > bgruening > hicup_hicup

changeset 2:1e39d74d4a93 draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit c546c919808a853d3e1556cb28bb4a5f7e1f9932
author bgruening
date Tue, 07 Nov 2017 02:46:25 -0500
parents 27d7395358b3
children 6d9b03537e58
files hicup_hicup.xml hicup_macros.xml
diffstat 2 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/hicup_hicup.xml	Sat Aug 19 07:35:23 2017 -0400
+++ b/hicup_hicup.xml	Tue Nov 07 02:46:25 2017 -0500
@@ -1,4 +1,4 @@
-<tool id="hicup_hicup" name="Hicup Pipeline" version="0.1.0">
+<tool id="hicup_hicup" name="Hicup Pipeline" version="@VERSION@.0">
     <description>controls the other programs in the HiCUP pipeline.</description>
     <macros>
         <import>hicup_macros.xml</import>
@@ -99,7 +99,7 @@
         <section name="advanced_options" title="Advanced options">
             <expand macro="re2" />
             <expand macro="filter_longest_shortest" />
-            <expand macro="no_fill" />     
+            <expand macro="no_fill" />
         </section>
     </inputs>
     <outputs>
@@ -134,7 +134,7 @@
 
             <!-- outputs -->
             <output name="hicup_results" file="results.html" ftype="html" lines_diff="10000"/>
-            <output name="dataset_hicup" file="dataset.hicup.sam" lines_diff="5" />
+            <output name="dataset_hicup" file="dataset.hicup.sam" lines_diff="10" />
             <output name="hicup_report" file="HiCUP_summary_report.txt" lines_diff="2"/>
             
             <output_collection name="intermediate_results">
--- a/hicup_macros.xml	Sat Aug 19 07:35:23 2017 -0400
+++ b/hicup_macros.xml	Tue Nov 07 02:46:25 2017 -0500
@@ -1,8 +1,8 @@
-
 <macros>
-   <xml name="requirements_hicup">
+    <token name="@VERSION@">0.5.10</token>
+    <xml name="requirements_hicup">
         <requirements>
-            <requirement type="package" version="0.5.9">hicup</requirement>
+            <requirement type="package" version="@VERSION@">hicup</requirement>
             <requirement type="package" version="2.2.6">bowtie2</requirement>
             <requirement type="package" version="1.2">samtools</requirement>
             <requirement type="package" version="0.13.1">docutils</requirement>