Mercurial > repos > bgruening > hicexplorer_hictransform
comparison hicTransform.xml @ 3:778158ebfddd draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 683d64a78adb3ff671f750d969d9daee5108169d
| author | iuc |
|---|---|
| date | Wed, 07 Mar 2018 02:28:20 -0500 |
| parents | 40287e3ab12a |
| children | 74f4f6cbe6ef |
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| 2:40287e3ab12a | 3:778158ebfddd |
|---|---|
| 1 <tool id="hicexplorer_hictransform" name="@BINARY@" version="@WRAPPER_VERSION@.1"> | 1 <tool id="hicexplorer_hictransform" name="@BINARY@" version="@WRAPPER_VERSION@.0"> |
| 2 <description>transforms a matrix to a obs_exp, pearson and covariance matrix</description> | 2 <description>transforms a matrix to a obs_exp, pearson and covariance matrix</description> |
| 3 <macros> | 3 <macros> |
| 4 <token name="@BINARY@">hicTransform</token> | 4 <token name="@BINARY@">hicTransform</token> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 52 </test> | 52 </test> |
| 53 <test> | 53 <test> |
| 54 <param name="matrix_h5_cooler" value="small_test_matrix_50kb_res.h5"/> | 54 <param name="matrix_h5_cooler" value="small_test_matrix_50kb_res.h5"/> |
| 55 <param name="outputFormat" value="cool" /> | 55 <param name="outputFormat" value="cool" /> |
| 56 <output name="obs_exp" file="obs_exp_small_50kb.cool" ftype="cool" compare="sim_size"/> | 56 <output name="obs_exp" file="obs_exp_small_50kb.cool" ftype="cool" compare="sim_size"/> |
| 57 <output name="pearson" file="pearson_small_50kb.cool" ftype="cool" compare="sim_size"/> | 57 <output name="pearson" file="pearson_small_50kb_transform.cool" ftype="cool" compare="sim_size"/> |
| 58 <output name="covariance" file="covariance_small_50kb.cool" ftype="cool" compare="sim_size"/> | 58 <output name="covariance" file="covariance_small_50kb.cool" ftype="cool" compare="sim_size"/> |
| 59 </test> | 59 </test> |
| 60 </tests> | 60 </tests> |
| 61 <help><![CDATA[ | 61 <help><![CDATA[ |
| 62 Transformation of matrix for plotting | 62 Transformation of matrix for plotting |