view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 22:e7e5855492df draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"

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−# Created with chicQualityControl version 3.6
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−# QC report for matrices: 0_matrix.cool 1_matrix.cool 
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−#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.
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−Number of reference points: 43
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−Number of accepted reference points: 35
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−Number of rejected reference points: 8
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−Number of faulty reference points: 0
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−A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
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−It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
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−Please check the results of hicInfo to validate this for your data.