diff macros.xml @ 1:a6ccec9faaa3 draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 2f347b0756d720114f037ed1ff9ba4836e1b3b04

--- a/macros.xml	Sun Oct 09 17:36:24 2016 -0400
+++ b/macros.xml	Wed Mar 29 18:39:55 2017 -0400
@@ -11,9 +11,10 @@
     </xml>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">1.2</token>
+    <token name="@WRAPPER_VERSION@">1.7.1</token>
     <xml name="requirements">
         <requirements>
+            <requirement type="package" version="2.7.13">python</requirement>
             <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement>
             <yield />
         </requirements>
@@ -33,8 +34,8 @@
     </xml>
 
     <xml name="colormap">
-        <param argument="--colorMap" type="select" label="Color map to use for the heatmap" help=" Available color map names can be found here: http://www.astro.lsa.umich.edu/~msshin/science/code/matplotlib_cm/">
-            <option value="RdYlBu" selected="true">RdYlBu</option>
+        <param argument="--colorMap" name="colormap" type="select" optional="True" label="Color map to use for the heatmap" help=" Available color map names can be found here: http://www.astro.lsa.umich.edu/~msshin/science/code/matplotlib_cm/">
+            <option value="RdYlBu">RdYlBu</option>
             <option value="Accent">Accent</option>
             <option value="Spectral">Spectral</option>
             <option value="Set1">Set1</option>
@@ -152,7 +153,7 @@
             <option value="RdPu_r">RdPu reversed</option>
             <option value="YlGn_r">YlGn reversed</option>
             <option value="PuBuGn_r">PuBuGn reversed</option>
-            <option value="RdYlBu_r">RdYlBu reversed</option>
+            <option value="RdYlBu_r" selected="True">RdYlBu reversed</option>
             <option value="RdYlGn_r">RdYlGn reversed</option>
             <option value="YlGnBu_r">YlGnBu reversed</option>
             <option value="YlOrBr_r">YlOrBr reversed</option>
@@ -270,7 +271,7 @@
     </xml>
 
     <xml name="minMappingQuality">
-        <param argument="--minMappingQuality" type="integer" optional="true" value="1" min="1"
+        <param argument="--minMappingQuality" type="integer" optional="true" value="" min="1"
             label="Minimum mapping quality"
             help= "If set, only reads that have a mapping quality score higher than the given value are considered.
                 *Note* Bowtie's Mapping quality is related to uniqueness: the higher the score, the more unique is a read.