diff hicSumMatrices.xml @ 24:0147ee498251 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788

--- a/hicSumMatrices.xml	Tue Jan 10 18:10:16 2023 +0000
+++ b/hicSumMatrices.xml	Mon Jul 01 19:00:02 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>combine Hi-C matrices of the same size</description>
     <macros>
         <token name="@BINARY@">hicSumMatrices</token>
@@ -20,17 +20,17 @@
 ]]>
     </command>
     <inputs>
-        <expand macro='matrix_h5_cooler_multiple_macro' />
+        <expand macro="matrix_h5_cooler_multiple_macro" />
     </inputs>
     <outputs>
-        <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple' />
+        <data name="outFileName" from_work_dir="matrix" format_source="matrix_h5_cooler_multiple" />
     </outputs>
     <tests>
         <test>
             <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" />
             <output name="outFileName" ftype="h5">
                 <assert_contents>
-                    <has_h5_keys keys='intervals,matrix' />
+                    <has_h5_keys keys="intervals,matrix" />
                 </assert_contents>
             </output>
         </test>
@@ -38,7 +38,7 @@
             <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" />
             <output name="outFileName" ftype="cool">
                 <assert_contents>
-                    <has_h5_keys keys='bins,chroms,indexes,pixels' />
+                    <has_h5_keys keys="bins,chroms,indexes,pixels" />
                 </assert_contents>
             </output>
         </test>