Mercurial > repos > bgruening > hicexplorer_hicsummatrices

comparison test-data/hicQuickQC/QC.log @ 24:0147ee498251 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
author iuc
date Mon, 01 Jul 2024 19:00:02 +0000
parents e7e5855492df
children 891202c51263
comparison
equal deleted inserted replaced
23:ba2a39a88953 24:0147ee498251
1 1
2 File /tmp/tmp12xmnm2f.h5 2 File /tmp/tmpjkr0wi60/tmp/tmp8o_td4fd.h5
3 Sequenced reads 983 3 Sequenced reads 983
4 Min rest. site distance 300 4 Min rest. site distance 300
5 Max library insert size 1000 5 Max library insert size 1000
6 6
7 # count (percentage w.r.t. total sequenced reads) 7 # count (percentage w.r.t. total sequenced reads)
10 One mate unmapped 506 (51.48) 10 One mate unmapped 506 (51.48)
11 One mate not unique 13 (1.32) 11 One mate not unique 13 (1.32)
12 Low mapping quality 164 (16.68) 12 Low mapping quality 164 (16.68)
13 13
14 # count (percentage w.r.t. mappable, unique and high quality pairs) 14 # count (percentage w.r.t. mappable, unique and high quality pairs)
15 dangling end GATC 1 (0.33) 15 dangling end GATC (restriction sequence GATC) 1 (0.33)
16 self ligation (removed) 0 (0.00) 16 self ligation (removed) 0 (0.00)
17 One mate not close to rest site 0 (0.00) 17 One mate not close to rest site 0 (0.00)
18 same fragment 84 (28.00) 18 same fragment 84 (28.00)
19 self circle 33 (11.00) 19 self circle 33 (11.00)
20 duplicated pairs 0 (0.00) 20 duplicated pairs 0 (0.00)