comparison hicSumMatrices.xml @ 24:0147ee498251 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788

23:ba2a39a88953

<tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>combine Hi-C matrices of the same size</description>
    <macros>
        <token name="@BINARY@">hicSumMatrices</token>
        <import>macros.xml</import>
    </macros>

        && mv 'matrix.$extension' matrix
]]>
    </command>
    <inputs>
        <expand macro='matrix_h5_cooler_multiple_macro' />
    </inputs>
    <outputs>
        <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple' />
    </outputs>
    <tests>
        <test>
            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" />
            <output name="outFileName" ftype="h5">
                <assert_contents>
                    <has_h5_keys keys='intervals,matrix' />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" />
            <output name="outFileName" ftype="cool">
                <assert_contents>
                    <has_h5_keys keys='bins,chroms,indexes,pixels' />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[

24:0147ee498251

<tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>combine Hi-C matrices of the same size</description>
    <macros>
        <token name="@BINARY@">hicSumMatrices</token>
        <import>macros.xml</import>
    </macros>

        && mv 'matrix.$extension' matrix
]]>
    </command>
    <inputs>
        <expand macro="matrix_h5_cooler_multiple_macro" />
    </inputs>
    <outputs>
        <data name="outFileName" from_work_dir="matrix" format_source="matrix_h5_cooler_multiple" />
    </outputs>
    <tests>
        <test>
            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" />
            <output name="outFileName" ftype="h5">
                <assert_contents>
                    <has_h5_keys keys="intervals,matrix" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" />
            <output name="outFileName" ftype="cool">
                <assert_contents>
                    <has_h5_keys keys="bins,chroms,indexes,pixels" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[