Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts

view test-data/raw_qc_report @ 11:4a3ccb7d4fc9 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit fd5d2211338239af6c577d66aeee3bb275c9b15b
author iuc
date Wed, 02 May 2018 16:48:34 -0400
parents 5b5731e05d01
children 59e553199b1b
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File	matrix.h5		
Pairs considered	983		
Min rest. site distance	300		
Max library insert size	1000		

#	count	(percentage w.r.t. total sequenced reads)
Pairs mappable, unique and high quality	300	(30.52)
Pairs used	215	(21.87)
One mate unmapped	506	(51.48)
One mate not unique	13	(1.32)
One mate low quality	164	(16.68)

#	count	(percentage w.r.t. mappable, unique and high quality pairs)
dangling end	0	(0.00)
self ligation (removed)	0	(0.00)
One mate not close to rest site	0	(0.00)
same fragment	85	(28.33)
self circle	0	(0.00)
duplicated pairs	0	(0.00)

#	count	(percentage w.r.t. total valid pairs used)
inter chromosomal	24	(11.16)
short range < 20kb	61	(28.37)
long range	130	(60.47)
inward pairs	42	(19.53)
outward pairs	66	(30.70)
left pairs	48	(22.33)
right pairs	35	(16.28)