diff hicPlotDistVsCounts.xml @ 13:59e553199b1b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"

--- a/hicPlotDistVsCounts.xml	Sat Jun 09 14:59:05 2018 -0400
+++ b/hicPlotDistVsCounts.xml	Mon Dec 09 10:12:34 2019 +0000
@@ -11,8 +11,8 @@
         #set matrices_labels=[]
         #for $counter, $m, in enumerate($matrices):
             #set identifier = re.sub('[^\s\w\-]', '_', str($m.element_identifier))
-            ln -f -s '${m}' '${identifier}_${counter}' &&
-            #silent $matrices_path.append("'%s_%s'" % ($identifier, $counter))
+            ln -f -s '${m}' '${identifier}_${counter}.$m.ext' &&
+            #silent $matrices_path.append("'%s_%s.%s'" % ($identifier, $counter, $m.ext))
             #silent $matrices_labels.append("'%s'" % ($identifier))
         #end for
 
@@ -64,19 +64,19 @@
     </outputs>
     <tests>
         <test>
-            <param name="matrices" ftype="h5" value="small_test_matrix_50kb_res.h5"/>
+            <param name="matrices" ftype="h5" value="small_test_matrix.h5"/>
             <param name="skipDiagonal" value="False"/>
             <output name="plotFile" file="hicPlotDistVsCounts_result1.png" ftype="png" compare="sim_size"/>
         </test>
         <test>
-            <param name="matrices" ftype="h5" value="small_test_matrix_50kb_res.h5"/>
+            <param name="matrices" ftype="h5" value="small_test_matrix.h5"/>
             <param name="skipDiagonal" value="False"/>
             <param name='outFileData_Boolean' value='True'/>
             <output name="plotFile" file="hicPlotDistVsCounts_result1.png" ftype="png" compare="sim_size"/>
             <output name="outFileData" file="distVsCounts.txt" ftype="txt" compare="sim_size" delta='600'/>
         </test>
         <test>
-            <param name="matrices" ftype="h5" value="small_test_matrix_50kb_res.h5,small_test_matrix_50kb_res.h5"/>
+            <param name="matrices" ftype="h5" value="small_test_matrix.h5,small_test_matrix.h5"/>
             <param name="skipDiagonal" value="False"/>
             <param name="perchr" value="True" />
             <repeat name="chromosomeExclude">