diff hicMergeLoops.xml @ 7:0b0145d861d2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788

--- a/hicMergeLoops.xml	Tue Jan 10 18:03:59 2023 +0000
+++ b/hicMergeLoops.xml	Mon Jul 01 18:55:01 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicmergeloops" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicmergeloops" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>merge detected loops of different resolutions.</description>
     <macros>
         <token name="@BINARY@">hicMergeLoops</token>
@@ -17,16 +17,16 @@
             --outFileName merged_loops.bedgraph
     ]]>    </command>
     <inputs>
-        <param argument="--inputFiles" type="data" format='bed' multiple="true" label="Loop files to merge" help="The loop files from hicDetectLoops. To use files from other sources,
+        <param argument="--inputFiles" type="data" format="bed" multiple="true" label="Loop files to merge" help="The loop files from hicDetectLoops. To use files from other sources,
             please follow \'chr start end chr start end\' format and remove any header." />
-        <param argument="--lowestResolution" type="integer" value="" label="Lowest used resolution" help='The lowest resolution of all loop files, i.e. 5kb, 10kb and 25kb, please use 25000.' />
+        <param argument="--lowestResolution" type="integer" value="" label="Lowest used resolution" help="The lowest resolution of all loop files, i.e. 5kb, 10kb and 25kb, please use 25000." />
     </inputs>
     <outputs>
         <data name="mergedLoops" from_work_dir="merged_loops.bedgraph" format="bed" label="${tool.name} on  [${on_string}]: Merged loops" />
     </outputs>
     <tests>
         <test>
-            <param name="inputFiles" ftype='bed' value="hicMergeLoops/gm12878_10kb.bedgraph,hicMergeLoops/gm12878_5kb.bedgraph,hicMergeLoops/gm12878_25kb.bedgraph" />
+            <param name="inputFiles" ftype="bed" value="hicMergeLoops/gm12878_10kb.bedgraph,hicMergeLoops/gm12878_5kb.bedgraph,hicMergeLoops/gm12878_25kb.bedgraph" />
             <param name="lowestResolution" value="25000" />
             <output name="mergedLoops" file="hicMergeLoops/gm12878_all.bedgraph" ftype="bed" />
         </test>