Mercurial > repos > bgruening > hicexplorer_hicfindtads
changeset 23:1d58fd2a6ad1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
| author | iuc |
|---|---|
| date | Tue, 10 Jan 2023 18:20:54 +0000 |
| parents | 261738a06f2f |
| children | 9fdb846cff1e |
| files | hicFindTADs.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/hicFindTADs.xml Tue Mar 16 13:57:02 2021 +0000 +++ b/hicFindTADs.xml Tue Jan 10 18:20:54 2023 +0000 @@ -148,7 +148,7 @@ <param name="matrix_h5_cooler" value="small_test_matrix.h5" /> <conditional name="precomputedZscore_conditional"> <param name="precomputedZscore_selector" value="precomputed" /> - <param name="scoreFile" value="find_TADs/multiFDR_tad_score.bm" /> + <param name="scoreFile" value="find_TADs/multiFDR_tad_score.bm" ftype="bedgraph" /> <param name="zscoreMatrix" value="find_TADs/multiFDR_zscore_matrix.h5" /> </conditional> <param name="minBoundaryDistance" value="5000" />
--- a/macros.xml Tue Mar 16 13:57:02 2021 +0000 +++ b/macros.xml Tue Jan 10 18:20:54 2023 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> <token name="@TOOL_VERSION@">3.6</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $use_range.range_min:$use_range.range_max @@ -333,7 +333,7 @@ <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" /> </xml> <xml name="xMax"> - <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> + <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> </xml> <xml name="filterThreshold"> <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." />