Mercurial > repos > bgruening > hicexplorer_hicfindtads

diff hicFindTADs.xml @ 18:e8e65a6c0ee4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"
author iuc
date Tue, 10 Mar 2020 18:57:03 +0000
parents 7d6f716d0e57
children 261738a06f2f
line wrap: on
line diff
--- a/hicFindTADs.xml	Thu Feb 06 00:22:42 2020 +0000
+++ b/hicFindTADs.xml	Tue Mar 10 18:57:03 2020 +0000
@@ -7,9 +7,9 @@
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
         ln -s '$matrix_h5_cooler' 'matrix.$matrix_h5_cooler.ext' &&
-        
+
         #if $precomputedZscore_conditional.precomputedZscore_selector == 'precomputed':
-            ln -s '$precomputedZscore_conditional.scoreFile' 'prefix_tad_score.bm' && 
+            ln -s '$precomputedZscore_conditional.scoreFile' 'prefix_tad_score.bm' &&
             ln -s '$precomputedZscore_conditional.zscoreMatrix' 'prefix_zscore_matrix.h5' &&
         #end if
         @BINARY@
@@ -72,7 +72,7 @@
                 <param name="zscoreMatrix" type="data" format='h5'  label="Precomputed z-score matrix"/>
             </when>
         </conditional>
-        
+
         <conditional name="multiple_comparison_conditional">
             <param name="multiple_comparison_selector" type="select" label="Multiple Testing Corrections" >
                 <option value="fdr" selected="True">False discovery rate</option>
@@ -137,7 +137,7 @@
                 <param name="maxDepth" value="30000"/>
                 <param name="step" value="15000"/>
             </conditional>
-            
+
             <param name="minBoundaryDistance" value="5000" />
             <conditional name="multiple_comparison_conditional">
                 <param name="multiple_comparison_selector" value="fdr"/>