Mercurial > repos > bgruening > hicexplorer_hicdetectloops
changeset 2:cabc992c6207 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 38accbb2df53ff03e810a3b92f4723fa29636950"
| author | iuc |
|---|---|
| date | Thu, 12 Mar 2020 21:49:03 +0000 |
| parents | 2d1988b74bf6 |
| children | 9f4340171345 |
| files | hicDetectLoops.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/hicDetectLoops.xml Wed Mar 11 09:34:24 2020 +0000 +++ b/hicDetectLoops.xml Thu Mar 12 21:49:03 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="hicexplorer_hicdetectloops" name="@BINARY@" version="@WRAPPER_VERSION@.0"> +<tool id="hicexplorer_hicdetectloops" name="@BINARY@" version="@WRAPPER_VERSION@.1"> <description>searches for enriched regions</description> <macros> <token name="@BINARY@">hicDetectLoops</token> @@ -65,7 +65,7 @@ <param argument="--maximumInteractionPercentageThreshold" type="float" value='0.1' label="Maximum interaction share" help= "For each genomic distance the maximum value is considered and all candidates need to have at least \'max_value * maximumInteractionPercentageThreshold\' interactions." /> <param argument="--pValue" type="float" label="P-value" help= "Rejection level for the statistical test for H0. H0 is peak region and background have the same distribution." value='0.05'/> <param argument="--maxLoopDistance" optional='true' type="integer" label="Maximal loop distance" help= "Maximum genomic distance of a loop, usually loops are within a distance of ~2MB." value='2000000'/> - <param argument="--minLoopDistance" optional='true' type="integer" label="Maximal loop distance" help= "Minimum genomic distance of a loop to be considered." value='100000'/> + <param argument="--minLoopDistance" optional='true' type="integer" label="Minimum loop distance" help= "Minimum genomic distance of a loop to be considered." value='100000'/> <param argument="--chromosomes" optional='true' type="text" label="Chromosomes to include" help= "Chromosomes to include in the analysis. If not set, all chromosomes are included." /> <param argument="--region" optional='true' type="text" label="Chromosomes to include" help= "The format is chr:start-end." /> <param name="statisticalTest_selector" type="select" label="Stistical test">