Mercurial > repos > bgruening > hicexplorer_hiccorrelate
diff hicCorrelate.xml @ 14:f4ad09bac0c9 draft
"planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 91a0182476a7fc26be7bef1677790518c4e88348-dirty"
| author | bgruening |
|---|---|
| date | Mon, 16 Dec 2019 13:16:11 +0000 |
| parents | 80580b4f06ed |
| children | d4f02063593f |
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--- a/hicCorrelate.xml Mon Dec 09 10:28:43 2019 +0000 +++ b/hicCorrelate.xml Mon Dec 16 13:16:11 2019 +0000 @@ -8,7 +8,7 @@ <command detect_errors="exit_code"><![CDATA[ @multiple_input_matrices@ - @BINARY@ + hicCorrelate --matrices $matrices --labels $mlabels @@ -28,8 +28,8 @@ --colorMap $colormap #end if - --outFileNameHeatmap heatmap.png - --outFileNameScatter scatter.png + --outFileNameHeatmap ./heatmap.png + --outFileNameScatter ./scatter.png ]]> </command> <inputs> @@ -62,11 +62,11 @@ <tests> <test> <repeat name="input_files"> - <param name="matrix" value="small_test_matrix.h5" ftype="h5"/> + <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5"/> <param name="mlabel" value="first"/> </repeat> <repeat name="input_files"> - <param name="matrix" value="small_test_matrix.h5" ftype="h5" /> + <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5" /> <param name="mlabel" value="second"/> </repeat> <param name="log1p" value="True"/> @@ -77,11 +77,11 @@ </test> <test> <repeat name="input_files"> - <param name="matrix" value="small_test_matrix.h5" ftype="h5"/> + <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5"/> <param name="mlabel" value="first"/> </repeat> <repeat name="input_files"> - <param name="matrix" value="small_test_matrix.h5" ftype="h5" /> + <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5" /> <param name="mlabel" value="second"/> </repeat>