diff hicAdjustMatrix.xml @ 1:dfefa10b9603 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"

--- a/hicAdjustMatrix.xml	Thu Feb 06 00:50:28 2020 +0000
+++ b/hicAdjustMatrix.xml	Wed Mar 11 09:30:04 2020 +0000
@@ -11,7 +11,7 @@
 
         ln -s '$matrix_h5_cooler' 'matrix_name.$matrix_h5_cooler.ext' &&
         @BINARY@ --matrix 'matrix_name.$matrix_h5_cooler.ext'
-        --action $action_selector 
+        --action $action_selector
         --outFileName '$matrix_file_out'
         #if $chromosomeOrRegionFile_conditional.chromosomeOrRegionFile_selector == "optionChromosomes":
             ## special: --chromosomeOrder is optional, but if given it needs at least one argument
@@ -47,12 +47,12 @@
                         <validator type="empty_field" />
                     </param>
                 </repeat>
-              
+
             </when>
             <when value="optionRegionFile">
                 <param argument="--regions" type="data" format="bed" optional="true" label="BED file with all regions to be considered."
                         help="Should contain the regions which should be kept, removed or masked." />
-               
+
             </when>
         </conditional>
     </inputs>
@@ -102,7 +102,7 @@
 Adjust of the Hi-C matrix
 =========================
 
-This tool is able to remove, keep or mask given regions of a Hi-C interaction matrix.
+This tool is able to remove, keep or mask given regions of a Hi-C interaction matrix, including entire chromosomes.
 
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