Mercurial > repos > bgruening > hicexplorer_hicadjustmatrix

annotate test-data/raw_qc_report @ 9:2e85fd0aa713 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
author iuc
date Thu, 05 Dec 2024 17:41:27 +0000
parents 384a4cdc3c95
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
1
7
384a4cdc3c95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
parents: 5
diff changeset
2 File matrix.cool
0
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
3 Sequenced reads 983
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
4 Min rest. site distance 300
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
5 Max library insert size 1000
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
6
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
7 # count (percentage w.r.t. total sequenced reads)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
8 Pairs mappable, unique and high quality 300 (30.52)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
9 Hi-C contacts 215 (21.87)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
10 One mate unmapped 506 (51.48)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
11 One mate not unique 13 (1.32)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
12 Low mapping quality 164 (16.68)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
13
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
14 # count (percentage w.r.t. mappable, unique and high quality pairs)
7
384a4cdc3c95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
parents: 5
diff changeset
15 dangling end GATC (restriction sequence GATC) 1 (0.33)
0
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
16 self ligation (removed) 0 (0.00)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
17 One mate not close to rest site 0 (0.00)
5
c90eeab97d9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
iuc
parents: 0
diff changeset
18 same fragment 84 (28.00)
c90eeab97d9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
iuc
parents: 0
diff changeset
19 self circle 33 (11.00)
0
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
20 duplicated pairs 0 (0.00)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
21
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
22 # count (percentage w.r.t. total valid pairs used)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
23 inter chromosomal 24 (11.16)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
24 Intra short range (< 20kb) 61 (28.37)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
25 Intra long range (>= 20kb) 130 (60.47)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
26 Read pair type: inward pairs 42 (19.53)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
27 Read pair type: outward pairs 66 (30.70)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
28 Read pair type: left pairs 48 (22.33)
ac2a7ed2de5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
bgruening
parents:
diff changeset
29 Read pair type: right pairs 35 (16.28)