Mercurial > repos > bgruening > graphclust_align_cluster

annotate test-data/alignment2.rnaz.out @ 0:5fba0aafe8f1 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
author bgruening
date Sat, 27 Oct 2018 13:09:04 -0400
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5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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1
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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2 ############################ RNAz 2.1 ##############################
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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3
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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4 Sequences: 5
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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5 Columns: 70
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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6 Reading direction: forward
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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7 Mean pairwise identity: 99.43
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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8 Shannon entropy: 0.01031
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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9 G+C content: 0.49714
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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10 Mean single sequence MFE: -14.75
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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11 Consensus MFE: -14.41
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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12 Energy contribution: -14.41
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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13 Covariance contribution: 0.00
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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14 Combinations/Pair: 1.00
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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15 Mean z-score: -0.20
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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16 Structure conservation index: 0.98
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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17 Background model: dinucleotide
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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18 Decision model: structural RNA alignment quality
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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19 SVM decision value: -1.57
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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20 SVM RNA-class probability: 0.014380
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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21 Prediction: OTHER
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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23 ######################################################################
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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25 >SEQ4_526_595_+
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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26 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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27 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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28 >SEQ5_526_595_+
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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29 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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30 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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31 >SEQ16_526_595_+
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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32 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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33 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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34 >SEQ19_523_592_+
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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35 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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36 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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37 >SEQ14_529_598_+
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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38 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUUCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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39 (((((((.((((..((((((....)))))).....))))..)))))))............((....)).. ( -16.10, z-score = -0.67, R)
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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40 >consensus
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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41 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
5fba0aafe8f1 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
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42 (((((((...((((((((((....))))).......))))))))))))............((....)).. (-14.41 = -14.41 + 0.00)