view glimmer_orf_to_seq.xml @ 3:ce7228503d49

changes

<tool id="glimmer_orf-to-sequence" name="ORF to Sequence" version="0.1">
    <description>assigns ORF to its DNA sequence</description>
    <requirements>
        <requirement type="package" version="1.61">biopython</requirement>
    </requirements>
    <command interpreter="python">
        glimmer_orf_to_seq.py
            $glimmer_orfs
            $input_fasta
            $output
    </command>
    <inputs>
        <param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/>
        <param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/>
    </inputs>
    <outputs>
        <data name="output" type="data" format="fasta"/>
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help>

**What it does**

This tool extract all gene sequences from a genome, which are predicted with Glimmer3.

    </help>
</tool>