Mercurial > repos > bgruening > glimmer
comparison glimmer3-main-wrapper.xml @ 1:a6582d591d64
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 07 Jun 2013 07:45:02 -0400 |
| parents | 8624069d7a0e |
| children | 2d0c26885604 |
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| 0:8624069d7a0e | 1:a6582d591d64 |
|---|---|
| 48 | 48 |
| 49 rm $temp | 49 rm $temp |
| 50 </command> | 50 </command> |
| 51 <inputs> | 51 <inputs> |
| 52 <param name="seq_input" type="data" format="fasta" label="Genome Sequence" /> | 52 <param name="seq_input" type="data" format="fasta" label="Genome Sequence" /> |
| 53 <param name="icm_input" type="data" format="binary" label="Interpolated context model (ICM)" /> | 53 <param name="icm_input" type="data" format="data" label="Interpolated context model (ICM)" /> |
| 54 | 54 |
| 55 <param name="max_olap" type="integer" value="50" label="Set maximum overlap length" help="Overlaps this short or shorter are ignored." /> | 55 <param name="max_olap" type="integer" value="50" label="Set maximum overlap length" help="Overlaps this short or shorter are ignored." /> |
| 56 <param name="gene_len" type="integer" value="90" label="Set the minimum gene length to n nucleotides" hrlp="This does not include the bases in the stop codon."/> | 56 <param name="gene_len" type="integer" value="90" label="Set the minimum gene length to n nucleotides" hrlp="This does not include the bases in the stop codon."/> |
| 57 <param name="threshold" type="integer" value="30" label="Set threshold score for calling as gene" help="If the in-frame score >= N, then the region is given a number and considered a potential gene." /> | 57 <param name="threshold" type="integer" value="30" label="Set threshold score for calling as gene" help="If the in-frame score >= N, then the region is given a number and considered a potential gene." /> |
| 58 <param name="gc_percent" type="float" value="0.0" label="Set the GC percentage of the independent model, i.e., the model of intergenic sequence" help="If 0.0 specified, the GC percentage will be counted from the input file." /> | 58 <param name="gc_percent" type="float" value="0.0" label="Set the GC percentage of the independent model, i.e., the model of intergenic sequence" help="If 0.0 specified, the GC percentage will be counted from the input file." /> |