Mercurial > repos > bgruening > flexynesis

changeset 4:1a5f8cedda43 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis commit d3154a8d94e936c33056665edc74d103e54fc981
author bgruening
date Mon, 30 Jun 2025 17:19:10 +0000
parents 525c661a7fdc
children
files flexynesis.xml macros.xml test-data/loc.sample
diffstat 3 files changed, 21 insertions(+), 19 deletions(-) [+]
line wrap: on
line diff
--- a/flexynesis.xml	Tue Jun 24 05:55:40 2025 +0000
+++ b/flexynesis.xml	Mon Jun 30 17:19:10 2025 +0000
@@ -1045,18 +1045,18 @@
             <output_collection name="plots" type="list">
                 <element name="job.embeddings_test_pca_Erlotinib_known">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="962,732" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="962,732" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
                 <element name="job.embeddings_test_pca_Erlotinib_predicted">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="959.5,732.5" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="959.5,732.5" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1076,10 +1076,10 @@
             <output_collection name="plots" type="list">
                 <element name="clin_km_km_risk_subtypes">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="971,732" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="971,732" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1102,10 +1102,10 @@
             <output_collection name="plots" type="list">
                 <element name="job.final_model_cox_hazard_ratios">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="972,737" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="972,737" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1124,10 +1124,10 @@
             <output_collection name="plots" type="list">
                 <element name="job.predicted_labels_scatter_Erlotinib">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="969,735" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="969,735" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1940"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1940" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1257,10 +1257,10 @@
             <output_collection name="plots" type="list">
                 <element name="job.final_model_cox_hazard_ratios">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="972,737" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="972,737" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
--- a/macros.xml	Tue Jun 24 05:55:40 2025 +0000
+++ b/macros.xml	Mon Jun 30 17:19:10 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.2.20</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">24.1</token>
     <xml name="requirements">
         <requirements>
--- a/test-data/loc.sample	Tue Jun 24 05:55:40 2025 +0000
+++ b/test-data/loc.sample	Mon Jun 30 17:19:10 2025 +0000
@@ -1,1 +1,3 @@
 lgg_tcga	lgg_tcga	1
+acc_tcga_gdc	acc_tcga_gdc	1
+acc_2019	acc_2019	1
\ No newline at end of file