# HG changeset patch
# User bgruening
# Date 1499874677 14400
# Node ID e614ec7a43b86232d54a0358e9ea365ea038d90c
# Parent  99f356eeba15adc3a329413724dd84241fcbb720
planemo upload commit caa6f11d80692d7e03f2224f69a535ddd577746e

diff -r 99f356eeba15 -r e614ec7a43b8 find_subsequences.xml
--- a/find_subsequences.xml	Tue Apr 05 15:26:05 2016 -0400
+++ b/find_subsequences.xml	Wed Jul 12 11:51:17 2017 -0400
@@ -1,15 +1,14 @@
-<tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.2">
+<tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.3">
     <description>providing regions in BED format</description>
     <requirements>
-        <!-- Contains also the Conda dependency, see https://anaconda.org/anaconda/biopython -->
-        <requirement type="package" version="1.65">biopython</requirement>
+        <requirement type="package" version="1.70">biopython</requirement>
     </requirements>
-    <command interpreter="python">
+    <command>
     <![CDATA[
-        find_subsequences.py
-            --input "${input}"
-            --output "${output}"
-            --pattern "$pattern_conditional.pattern"
+        python '$__tool_directory__/find_subsequences.py'
+            --input '${input}'
+            --output '${output}'
+            --pattern '$pattern_conditional.pattern'
             #if $input.ext == 'fasta':
                 --format 'fasta'
             #else:
diff -r 99f356eeba15 -r e614ec7a43b8 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Apr 05 15:26:05 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="biopython" version="1.65">
-        <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>