Mercurial > repos > bgruening > erga_ear
view test-data/ele_pre.asm2_gfastats.txt @ 2:0efed25f6d38 draft default tip
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit 720787c4fb8885f5127ab6ada2813f8dd580921c
author | bgruening |
---|---|
date | Tue, 15 Oct 2024 12:52:44 +0000 |
parents | 6af76d4371f8 |
children |
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+++Assembly summary+++: Expected genome size: 3013249396 # scaffolds: 555 Total scaffold length: 3238925270 Average scaffold length: 5835901.39 Scaffold N50: 116290662 Scaffold auN: 129007713.10 Scaffold L50: 10 Scaffold NG50: 125802197 Scaffold auNG: 138669684.14 Scaffold LG50: 9 Largest scaffold: 240286497 Smallest scaffold: 5000 # contigs: 632 Total contig length: 3235415746 Average contig length: 5119328.71 Contig N50: 88190939 Contig auN: 98728369.04 Contig L50: 12 Contig NG50: 88213608 Contig auNG: 106007594.40 Contig LG50: 11 Largest contig: 234471621 Smallest contig: 1506 # gaps in scaffolds: 77 Total gap length in scaffolds: 3509524 Average gap length in scaffolds: 45578.23 Gap N50 in scaffolds: 1893595 Gap auN in scaffolds: 1109381.96 Gap L50 in scaffolds: 1 Largest gap in scaffolds: 1893595 Smallest gap in scaffolds: 13 Base composition (A:C:G:T): 950023619:669435937:665265498:950690692 GC content %: 41.25 # soft-masked bases: 0 # segments: 632 Total segment length: 3235415746 Average segment length: 5119328.71 # gaps: 77 # paths: 555 Scaffold N10: 234471621 Scaffold N20: 209119963 Scaffold N30: 164853315 Scaffold N40: 134179787 Scaffold N50: 116290662 Scaffold N60: 93312721 Scaffold N70: 84883371 Scaffold N80: 80300231 Scaffold N90: 65267526 Scaffold N100: 5000 Scaffold L10: 2 Scaffold L20: 3 Scaffold L30: 5 Scaffold L40: 7 Scaffold L50: 10 Scaffold L60: 13 Scaffold L70: 17 Scaffold L80: 21 Scaffold L90: 25 Scaffold L100: 555 Scaffold NG10: 234471621 Scaffold NG20: 209119963 Scaffold NG30: 164853315 Scaffold NG40: 134179787 Scaffold NG50: 125802197 Scaffold NG60: 96796698 Scaffold NG70: 85267550 Scaffold NG80: 82835581 Scaffold NG90: 79589986 Scaffold NG100: 37243292 Scaffold LG10: 2 Scaffold LG20: 3 Scaffold LG30: 5 Scaffold LG40: 7 Scaffold LG50: 9 Scaffold LG60: 12 Scaffold LG70: 15 Scaffold LG80: 18 Scaffold LG90: 22 Scaffold LG100: 27 Contig N10: 204044015 Contig N20: 160573602 Contig N30: 122210704 Contig N40: 116110962 Contig N50: 88190939 Contig N60: 72901558 Contig N70: 47659775 Contig N80: 35818318 Contig N90: 20408791 Contig N100: 1506 Contig L10: 2 Contig L20: 4 Contig L30: 6 Contig L40: 9 Contig L50: 12 Contig L60: 16 Contig L70: 21 Contig L80: 30 Contig L90: 40 Contig L100: 632 Contig NG10: 204044015 Contig NG20: 164853315 Contig NG30: 122210704 Contig NG40: 116290662 Contig NG50: 88213608 Contig NG60: 77872504 Contig NG70: 58969899 Contig NG80: 40048101 Contig NG90: 34729504 Contig NG100: 6573539 Contig LG10: 2 Contig LG20: 3 Contig LG30: 6 Contig LG40: 8 Contig LG50: 11 Contig LG60: 14 Contig LG70: 19 Contig LG80: 25 Contig LG90: 33 Contig LG100: 49 Gap N10: 1893595 Gap N20: 1893595 Gap N30: 1893595 Gap N40: 1893595 Gap N50: 1893595 Gap N60: 323721 Gap N70: 312502 Gap N80: 146315 Gap N90: 99478 Gap N100: 13 Gap L10: 1 Gap L20: 1 Gap L30: 1 Gap L40: 1 Gap L50: 1 Gap L60: 2 Gap L70: 3 Gap L80: 5 Gap L90: 8 Gap L100: 77