view test-data/ele_pre.asm2_gfastats.txt @ 2:0efed25f6d38 draft default tip

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit 720787c4fb8885f5127ab6ada2813f8dd580921c

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−+++Assembly summary+++: 
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−Expected genome size: 3013249396
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−# scaffolds: 555
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−Total scaffold length: 3238925270
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−Average scaffold length: 5835901.39
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−Scaffold N50: 116290662
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−Scaffold auN: 129007713.10
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−Scaffold L50: 10
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−Scaffold NG50: 125802197
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−Scaffold auNG: 138669684.14
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−Scaffold LG50: 9
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−Largest scaffold: 240286497
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−Smallest scaffold: 5000
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−# contigs: 632
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−Total contig length: 3235415746
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−Average contig length: 5119328.71
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−Contig N50: 88190939
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−Contig auN: 98728369.04
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−Contig L50: 12
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−Contig NG50: 88213608
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−Contig auNG: 106007594.40
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−Contig LG50: 11
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−Largest contig: 234471621
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−Smallest contig: 1506
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−# gaps in scaffolds: 77
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−Total gap length in scaffolds: 3509524
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−Average gap length in scaffolds: 45578.23
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−Gap N50 in scaffolds: 1893595
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−Gap auN in scaffolds: 1109381.96
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−Gap L50 in scaffolds: 1
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−Largest gap in scaffolds: 1893595
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−Smallest gap in scaffolds: 13
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−Base composition (A:C:G:T): 950023619:669435937:665265498:950690692
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−GC content %: 41.25
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−# soft-masked bases: 0
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−# segments: 632
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−Total segment length: 3235415746
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−Average segment length: 5119328.71
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−# gaps: 77
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−# paths: 555
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−Scaffold N10: 234471621
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−Scaffold N20: 209119963
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−Scaffold N30: 164853315
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−Scaffold N40: 134179787
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−Scaffold N50: 116290662
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−Scaffold N60: 93312721
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−Scaffold N70: 84883371
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−Scaffold N80: 80300231
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−Scaffold N90: 65267526
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−Scaffold N100: 5000
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−Scaffold L10: 2
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−Scaffold L20: 3
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−Scaffold L30: 5
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−Scaffold L40: 7
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−Scaffold L50: 10
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−Scaffold L60: 13
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−Scaffold L70: 17
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−Scaffold L80: 21
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−Scaffold L90: 25
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−Scaffold L100: 555
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−Scaffold NG10: 234471621
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−Scaffold NG20: 209119963
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−Scaffold NG30: 164853315
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−Scaffold NG40: 134179787
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−Scaffold NG50: 125802197
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−Scaffold NG60: 96796698
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−Scaffold NG70: 85267550
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−Scaffold NG80: 82835581
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−Scaffold NG90: 79589986
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−Scaffold NG100: 37243292
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−Scaffold LG10: 2
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−Scaffold LG20: 3
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−Scaffold LG30: 5
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−Scaffold LG40: 7
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−Scaffold LG50: 9
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−Scaffold LG60: 12
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−Scaffold LG70: 15
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−Scaffold LG80: 18
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−Scaffold LG90: 22
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−Scaffold LG100: 27
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−Contig N10: 204044015
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−Contig N20: 160573602
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−Contig N30: 122210704
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−Contig N40: 116110962
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−Contig N50: 88190939
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−Contig N60: 72901558
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−Contig N70: 47659775
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−Contig N80: 35818318
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−Contig N90: 20408791
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−Contig N100: 1506
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−Contig L10: 2
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−Contig L20: 4
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−Contig L30: 6
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−Contig L40: 9
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−Contig L50: 12
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−Contig L60: 16
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−Contig L70: 21
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−Contig L80: 30
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−Contig L90: 40
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−Contig L100: 632
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−Contig NG10: 204044015
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−Contig NG20: 164853315
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−Contig NG30: 122210704
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−Contig NG40: 116290662
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−Contig NG50: 88213608
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−Contig NG60: 77872504
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−Contig NG70: 58969899
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−Contig NG80: 40048101
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−Contig NG90: 34729504
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−Contig NG100: 6573539
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−Contig LG10: 2
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−Contig LG20: 3
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−Contig LG30: 6
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−Contig LG40: 8
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−Contig LG50: 11
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−Contig LG60: 14
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−Contig LG70: 19
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−Contig LG80: 25
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−Contig LG90: 33
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−Contig LG100: 49
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−Gap N10: 1893595
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−Gap N20: 1893595
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−Gap N30: 1893595
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−Gap N40: 1893595
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−Gap N50: 1893595
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−Gap N60: 323721
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−Gap N70: 312502
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−Gap N80: 146315
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−Gap N90: 99478
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−Gap N100: 13
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−Gap L10: 1
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−Gap L20: 1
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−Gap L30: 1
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−Gap L40: 1
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−Gap L50: 1
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−Gap L60: 2
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−Gap L70: 3
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−Gap L80: 5
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−Gap L90: 8
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−Gap L100: 77