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annotate test-data/short_summary.specific.mammalia_odb10.pre.asm1.txt @ 2:0efed25f6d38 draft default tip

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planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit 720787c4fb8885f5127ab6ada2813f8dd580921c
author bgruening
date Tue, 15 Oct 2024 12:52:44 +0000
parents 6af76d4371f8
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6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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1 # BUSCO version is: 5.4.7
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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2 # The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226)
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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3 # Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_pre/ASSEMBLY_FASTAS/ele_pre.asm1.fasta
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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4 # BUSCO was run in mode: euk_genome_met
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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5 # Gene predictor used: metaeuk
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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7 ***** Results: *****
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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9 C:96.0%[S:95.3%,D:0.7%],F:1.1%,M:2.9%,n:9226
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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10 8855 Complete BUSCOs (C)
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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11 8788 Complete and single-copy BUSCOs (S)
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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12 67 Complete and duplicated BUSCOs (D)
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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13 101 Fragmented BUSCOs (F)
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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14 270 Missing BUSCOs (M)
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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15 9226 Total BUSCO groups searched
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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17 Assembly Statistics:
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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18 973 Number of scaffolds
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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19 1101 Number of contigs
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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20 3660021265 Total length
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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21 0.051% Percent gaps
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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22 111 MB Scaffold N50
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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23 73 MB Contigs N50
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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26 Dependencies and versions:
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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27 hmmsearch: 3.1
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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28 bbtools: 39.01
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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29 metaeuk: 6.a5d39d9
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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30 busco: 5.4.7