# HG changeset patch # User bgruening # Date 1464727913 14400 # Node ID 4bf9238ad734e3de59dcdbbe8459cc7e3de49e74 # Parent 72e5aaebe37f3049bb7cec29bc34e7c8dbc15832 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 6c002ea2995c85f5f16adb2ef1c6be82dfbc5417 diff -r 72e5aaebe37f -r 4bf9238ad734 main_macros.xml --- a/main_macros.xml Wed May 04 13:09:29 2016 -0400 +++ b/main_macros.xml Tue May 31 16:51:53 2016 -0400 @@ -14,11 +14,13 @@ + + + - @@ -43,18 +45,92 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + +
- - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -136,66 +212,71 @@ - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + - - - - @misc{fabrizio_costa_2015_15094, - author = {Fabrizio Costa and - Björn Grüning and - gigolo}, - title = {EDeN: EDeN - Graph Vectorizer}, - month = feb, - year = 2015, - doi = {10.5281/zenodo.15094}, - url = {http://dx.doi.org/10.5281/zenodo.15094} - } - } - - + + + + - - - - @article{scikit-learn, - title={Scikit-learn: Machine Learning in {P}ython}, - author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V. - and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P. - and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and - Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.}, - journal={Journal of Machine Learning Research}, - volume={12}, - pages={2825--2830}, - year={2011} - url = {https://github.com/scikit-learn/scikit-learn} - } - - - - - - - - @Misc{, - author = {Eric Jones and Travis Oliphant and Pearu Peterson and others}, - title = {{SciPy}: Open source scientific tools for {Python}}, - year = {2001--}, - url = "http://www.scipy.org/", - note = {[Online; accessed 2016-04-09]} - } - - + + + + + + + + + + + + + +
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+ + + + + + + + + + @misc{fabrizio_costa_2015_15094, + author = {Fabrizio Costa and + Björn Grüning and + gigolo}, + title = {EDeN: EDeN - Graph Vectorizer}, + month = feb, + year = 2015, + doi = {10.5281/zenodo.15094}, + url = {http://dx.doi.org/10.5281/zenodo.15094} + } + } + + + + + + + + @article{scikit-learn, + title={Scikit-learn: Machine Learning in {P}ython}, + author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V. + and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P. + and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and + Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.}, + journal={Journal of Machine Learning Research}, + volume={12}, + pages={2825--2830}, + year={2011} + url = {https://github.com/scikit-learn/scikit-learn} + } + + + + + + + + @Misc{, + author = {Eric Jones and Travis Oliphant and Pearu Peterson and others}, + title = {{SciPy}: Open source scientific tools for {Python}}, + year = {2001--}, + url = "http://www.scipy.org/", + note = {[Online; accessed 2016-04-09]} + } + + + + \ No newline at end of file diff -r 72e5aaebe37f -r 4bf9238ad734 test-data/regression_test.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_test.tabular Tue May 31 16:51:53 2016 -0400 @@ -0,0 +1,5 @@ +86.9702122735 1.00532111569 -1.01739601979 -0.613139481654 0.641846874331 +91.2021798817 -0.621522971207 1.11914889596 0.390012184498 1.28956938152 +-47.4101632272 -0.638416457964 -0.732777468453 -0.864026104978 -1.06109770116 +61.7128046302 -1.09994800577 -0.739679672932 0.585657963012 1.48906827536 +-206.998295124 0.130238853011 0.70574123041 1.33206565264 -1.33220923738 diff -r 72e5aaebe37f -r 4bf9238ad734 test-data/regression_train.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/regression_train.tabular Tue May 31 16:51:53 2016 -0400 @@ -0,0 +1,10 @@ +143.762620712 -0.330941870584 -1.17964571928 0.47944415578 -0.0486946279099 1.57951239219 +-88.5787166225 1.08055532812 -2.57109184022 -0.92512305494 0.317511276982 -1.202358944 +-82.8452345578 0.272541389247 -0.168636324107 0.923988150154 -0.467750945768 -0.719169535969 +72.4951388149 -0.268686605278 0.991068834926 0.731619322189 1.17038734294 0.323842059244 +11.805182128 1.03604670966 -0.709685560786 -1.54916691211 -0.614757954242 0.24176665894 +-63.9354970901 -0.101485840571 0.984112210822 -2.01704822953 0.282058758309 -0.776448499847 +126.325840796 -0.359998340179 0.353534448839 -1.23256828198 0.563632964937 1.15031170568 +23.0341392692 0.518540465136 1.03188231893 -2.53173026594 -0.0419267228327 0.193734455015 +67.6714937696 -0.115688051547 -0.821437865172 -0.368962397052 -0.526743874023 0.94315222831 +47.3927584881 -0.785096541368 -0.0942409319417 0.224267378731 -1.63317786831 1.26458811586 diff -r 72e5aaebe37f -r 4bf9238ad734 test-data/rfc_model01 Binary file test-data/rfc_model01 has changed diff -r 72e5aaebe37f -r 4bf9238ad734 test-data/rfc_result01 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rfc_result01 Tue May 31 16:51:53 2016 -0400 @@ -0,0 +1,6 @@ +0 1 2 3 0 +3.68258022948 2.82110345641 -3.990140724 -1.9523364774 1 +0.015942057224 -0.711958594347 0.125502976978 -0.972218263337 0 +2.08690768825 0.929399321468 -2.12924084484 -1.99714022188 1 +1.41321052084 0.523750660422 -1.4210539291 -1.49298569451 1 +0.76831404394 1.38267855169 -0.989045048734 0.649504257894 1 diff -r 72e5aaebe37f -r 4bf9238ad734 test-data/rfc_result02 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rfc_result02 Tue May 31 16:51:53 2016 -0400 @@ -0,0 +1,6 @@ +0 1 2 3 0 +3.68258022948 2.82110345641 -3.990140724 -1.9523364774 1 +0.015942057224 -0.711958594347 0.125502976978 -0.972218263337 0 +2.08690768825 0.929399321468 -2.12924084484 -1.99714022188 1 +1.41321052084 0.523750660422 -1.4210539291 -1.49298569451 1 +0.76831404394 1.38267855169 -0.989045048734 0.649504257894 1 diff -r 72e5aaebe37f -r 4bf9238ad734 test-data/rfr_model01 Binary file test-data/rfr_model01 has changed diff -r 72e5aaebe37f -r 4bf9238ad734 test-data/rfr_result01 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rfr_result01 Tue May 31 16:51:53 2016 -0400 @@ -0,0 +1,6 @@ +0 1 2 3 4 0 +86.9702122735 1.00532111569 -1.01739601979 -0.613139481654 0.641846874331 0.867517611177 +91.2021798817 -0.621522971207 1.11914889596 0.390012184498 1.28956938152 0.851121328511 +-47.4101632272 -0.638416457964 -0.732777468453 -0.864026104978 -1.06109770116 0.0534409530407 +61.7128046302 -1.09994800577 -0.739679672932 0.585657963012 1.48906827536 1.18927597457 +-206.998295124 0.130238853011 0.70574123041 1.33206565264 -1.33220923738 -0.350236265367