Mercurial > repos > bgruening > dotknot

view test-data/test1_output.txt @ 0:7d7194e4a205 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
author bgruening
date Thu, 17 Sep 2015 12:53:41 -0400
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>TMV
UGCAACUUGAGGUAGUCAAGAUGCAUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGGUUGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGAGGGGUUCGAAUCCCCCCGUUACCCCCGGUAGGGGCCCA
Sequence length:  214
Using TMV as file identifier

DotKnot is running...
Predicting pseudoknots...

Detected pseudoknots:
35 56 -10.97
ACGGAUUGUGUCCGUAAUCACA
(((((.[[[[)))))...]]]]

57 78 -12.92
CGUGGUGCGUACGAUAACGCAU
(((.[[[[[[)))...]]]]]]

79 108 -8.16
AGUGUUUUUCCCUCCACUUAAAUCGAAGGG
((((.....[[[[.))))........]]]]

111 176 -26.94
GUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGA
((((((....[[[[((((((.....(((((((...)))))))))))))))))))........]]]]

192 210 -13.83
CCGUUACCCCCGGUAGGGG
(((...[[[[)))..]]]]