diff dot2ct.xml @ 0:07b6202d71e2 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dot2ct commit 1973f3035c10db80883d80847ea254289f5cce2a-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dot2ct.xml	Thu Sep 17 16:49:04 2015 -0400
@@ -0,0 +1,37 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<tool id="rnastructure_dot2ct" name="Dot-Bracket to Connect Table (CT)" version="5.7.a">
+    <description>Converts the first sequence in a Dot-Bracket file into a CT file</description>
+    <requirements>
+        <requirement type="package" version="5.7">rnastructure</requirement>
+    </requirements>
+    
+    <version_command>dot2ct --version | grep -i version</version_command>
+    
+    <command>
+        dot2ct
+            $dotbracket_structure
+            $ct_structure
+    </command>
+    
+    <inputs>
+        <param format="dbn" name="dotbracket_structure" type="data" label="Alignment in BAM or SAM format" />
+    </inputs>
+    
+    <outputs>
+        <data format="txt" name="ct_structure" label="${tool.name} on ${dotbracket_structure.name}" />
+    </outputs>
+    
+    <tests>
+        <test>
+            <param name="dotbracket_structure" value="example1_input.dot-bracket.txt" format="dbn" />
+            
+            <output name="ct_structure" file="example1_output_seq1.ct.txt" />     
+        </test>
+    </tests>
+    
+    <help>Convert a Dot-Bracket file into a Connect Table.</help>
+    
+    <citations>
+        <citation type="doi">10.1186/1471-2105-11-129</citation>
+    </citations>
+</tool>