# HG changeset patch
# User bgruening
# Date 1492024406 14400
# Node ID d2ba01b3ee0c764a1934a1418d76695ef0d475e9
# Parent  128584543be726469521c381ded1ab40fed6e3e6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 074fed99c6df6bad17341bbfa57645f222907ad4

diff -r 128584543be7 -r d2ba01b3ee0c diffbind.xml
--- a/diffbind.xml	Tue Mar 08 08:13:36 2016 -0500
+++ b/diffbind.xml	Wed Apr 12 15:13:26 2017 -0400
@@ -1,11 +1,7 @@
-<tool id="diffbind" name="DiffBind" version="2.1.0">
+<tool id="diffbind" name="DiffBind" version="2.2.0">
     <description> differential binding analysis of ChIP-Seq peak data</description>
     <requirements>
-        <requirement type="binary">Rscript</requirement>
-        <requirement type="R-module">DESeq2</requirement>
-        <requirement type="package" version="3.0.3">R</requirement>
-        <requirement type="package" version="1.2.10">deseq2</requirement>
-        <requirement type="package" version="1.8.3">diffbind</requirement>
+        <requirement type="package" version="1.16.3">bioconductor-diffbind</requirement>
     </requirements>
     <stdio>
         <regex match="Execution halted"
diff -r 128584543be7 -r d2ba01b3ee0c tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Mar 08 08:13:36 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,42 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="R" version="3.0.3">
-        <repository changeset_revision="9a289bea9051" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="deseq2" version="1.2.10">
-        <repository changeset_revision="e8df6ebba5ff" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="diffbind" version="1.8.3">
-        <install version="1.0">
-            <actions>
-                <action type="setup_r_environment">
-                    <repository changeset_revision="9a289bea9051" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="R" version="3.0.3" />
-                    </repository>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gtools_3.1.1.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gdata_2.13.2.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/bitops_1.0-6.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/caTools_1.16.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/GenomicRanges_1.14.4.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RColorBrewer_1.0-5.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gplots_2.12.1.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/DiffBind_1.8.3.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        Differential Binding Analysis of ChIP-Seq peak data
-        http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html
-        </readme>
-    </package>
-</tool_dependency>