Mercurial > repos > bgruening > diffbind

comparison diffbind.xml @ 12:43884541e66f draft

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author bgruening
date Fri, 17 Jan 2014 04:05:12 -0500
parents a8dc71379df0
children 4de6355eca00
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11:a8dc71379df0 12:43884541e66f
17 ln -s $sample.bamcontrol #echo str($counter) + "_bamcontrol.bam"# && 17 ln -s $sample.bamcontrol #echo str($counter) + "_bamcontrol.bam"# &&
18 ln -s ${sample.bamcontrol.metadata.bam_index} #echo str($counter) + "_bamcontrol.bai"# && 18 ln -s ${sample.bamcontrol.metadata.bam_index} #echo str($counter) + "_bamcontrol.bai"# &&
19 #set $counter = $counter + 1 19 #set $counter = $counter + 1
20 #end for 20 #end for
21 21
22 Rscript \$AUGUSTUS_SCRIPT_PATH/diffbind.R 22 Rscript \$DIFFBIND_SCRIPT_PATH/diffbind.R
23 -i $infile 23 -i $infile
24 -o $outfile 24 -o $outfile
25 -p $plots 25 -p $plots
26 -f $format 26 -f $format
27 </command> 27 </command>