Mercurial > repos > bgruening > diffbind
comparison tool_dependencies.xml @ 13:42d23a280d80 draft
Uploaded
| author | bgruening |
|---|---|
| date | Sat, 15 Mar 2014 05:21:03 -0400 |
| parents | a8dc71379df0 |
| children | aefe2a771a95 |
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| 12:43884541e66f | 13:42d23a280d80 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="R_3_0_1" version="3.0.1"> | 3 <package name="R" version="3.0.3"> |
| 4 <repository changeset_revision="0a395bcd7efd" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="deseq2" version="1.0.17"> | 6 <package name="deseq2" version="1.2.10"> |
| 7 <repository changeset_revision="c62e0a0f4fed" name="package_deseq2_1_0_17" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="2d3eb2823bf7" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <set_environment version="1.0"> | 9 <set_environment version="1.0"> |
| 10 <environment_variable action="set_to" name="DIFFBIND_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> | 10 <environment_variable action="set_to" name="DIFFBIND_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> |
| 11 </set_environment> | 11 </set_environment> |
| 12 <package name="diffbind" version="1.8.3"> | 12 <package name="diffbind" version="1.8.3"> |
| 13 <install version="1.0"> | 13 <install version="1.0"> |
| 14 <actions> | 14 <actions> |
| 15 <action type="setup_r_environment"> | 15 <action type="setup_r_environment"> |
| 16 <repository changeset_revision="0a395bcd7efd" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 16 <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 17 <package name="R_3_0_1" version="3.0.1" /> | 17 <package name="R" version="3.0.3" /> |
| 18 </repository> | 18 </repository> |
| 19 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package> | 19 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package> |
| 20 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package> | 20 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package> |
| 21 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package> | 21 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package> |
| 22 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package> | 22 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package> |