# HG changeset patch
# User iuc
# Date 1749563503 0
# Node ID 3f75f7bc764d71cdefdaeb600e9c18dd87d2241e
# Parent  0729ae1533e5da3b5c9bbb6396e4f18428d76ff7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond commit b2634d43c65880b8450221276487b3198a8fe03c

diff -r 0729ae1533e5 -r 3f75f7bc764d diamond.xml
--- a/diamond.xml	Mon Feb 03 16:00:43 2025 +0000
+++ b/diamond.xml	Tue Jun 10 13:51:43 2025 +0000
@@ -714,7 +714,7 @@
             <output name="blast_tabular" file="diamond_results_log_test.tabular"/>
             <output name="log_file">
                 <assert_contents>
-                    <has_n_lines n="261"/>
+                    <has_n_lines n="259"/>
                     <has_text text="diamond blastx --quiet"/>
                     <has_text text="--log"/>
                     <has_line line="Sequences = 6, letters = 1694, average length = 282"/>
diff -r 0729ae1533e5 -r 3f75f7bc764d macros.xml
--- a/macros.xml	Mon Feb 03 16:00:43 2025 +0000
+++ b/macros.xml	Tue Jun 10 13:51:43 2025 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.1.11</token>
+    <token name="@TOOL_VERSION@">2.1.12</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
diff -r 0729ae1533e5 -r 3f75f7bc764d test-data/diamond_results.sam
--- a/test-data/diamond_results.sam	Mon Feb 03 16:00:43 2025 +0000
+++ b/test-data/diamond_results.sam	Tue Jun 10 13:51:43 2025 +0000
@@ -1,5 +1,5 @@
 @HD	VN:1.5	SO:query
-@PG	PN:DIAMOND	VN:2.1.11	CL:diamond view --threads 1 --daa input.daa --outfmt 101 --out /tmp/tmp61jyo35f/job_working_directory/000/6/outputs/dataset_bb83a399-fa7d-414f-afff-28cb61b3cd8d.dat --top 0 --forwardonly --verbose
+@PG	PN:DIAMOND	VN:2.1.12	CL:diamond view --threads 1 --daa input.daa --outfmt 101 --out /tmp/tmpbpupgk43/job_working_directory/000/6/outputs/dataset_dee40593-f3ac-46ef-ab6b-389367231bbc.dat --top 0 --forwardonly --verbose
 @mm	BlastP
 @CO	BlastP-like alignments
 @CO	Reporting AS: bitScore, ZR: rawScore, ZE: expected, ZI: percent identity, ZL: reference length, ZF: frame, ZS: query start DNA coordinate
diff -r 0729ae1533e5 -r 3f75f7bc764d test-data/diamond_results.xml
--- a/test-data/diamond_results.xml	Mon Feb 03 16:00:43 2025 +0000
+++ b/test-data/diamond_results.xml	Tue Jun 10 13:51:43 2025 +0000
@@ -2,7 +2,7 @@
 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>blastp</BlastOutput_program>
-  <BlastOutput_version>diamond 2.1.11</BlastOutput_version>
+  <BlastOutput_version>diamond 2.1.12</BlastOutput_version>
   <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), &quot;Fast and sensitive protein alignment using DIAMOND&quot;, Nature Methods 12:59-60.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>