Mercurial > repos > bgruening > deseq2
diff deseq2.xml @ 18:72613128bd65 draft
Uploaded
| author | bgruening |
|---|---|
| date | Mon, 30 Sep 2013 11:15:24 -0400 |
| parents | a05999fd6e26 |
| children | bbea9c694b34 |
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--- a/deseq2.xml Mon Sep 30 10:51:41 2013 -0400 +++ b/deseq2.xml Mon Sep 30 11:15:24 2013 -0400 @@ -4,7 +4,8 @@ <requirement type="binary">Rscript</requirement> <requirement type="R-module">DESeq2</requirement> <requirement type="package" version="3.0.1">R_3_0_1</requirement> - <requirement type="set_environment">DESEQ2_SCRIPT_PATH</requirement> + <requirement type="package" version="1.0.17">deseq2</requirement> + <!--<requirement type="set_environment">DESEQ2_SCRIPT_PATH</requirement>--> </requirements> <command interpreter="Rscript"> #import simplejson @@ -20,7 +21,7 @@ #set $temp_factor_name = list() #for $factor in $rep_factorName: - #set $temp_factor = dict() + #set $temp_factor = dict() #for $level in $factor.rep_factorLevel: ##$temp_factor_list.append( '%s::%s:%s' % ($factor.factorName.replace(' ','_'), $level.factorLevel, $level.factorIndex) ) $temp_factor.update({str($level.factorLevel): map(int, str($level.factorIndex).split(','))})