Mercurial > repos > bgruening > deseq2
comparison deseq2.xml @ 15:ff74cd9b0414 draft
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 05 Sep 2013 04:09:22 -0400 |
| parents | bb5c80d15e0a |
| children | 1d2a02bc2208 |
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| 14:bb5c80d15e0a | 15:ff74cd9b0414 |
|---|---|
| 1 <tool id="deseq2" name="DESeq2" version="2.0"> | 1 <tool id="deseq2" name="DESeq2" version="2.0.1"> |
| 2 <description>Determines differentially expressed transcripts from read alignments</description> | 2 <description>Determines differentially expressed transcripts from read alignments</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="binary">Rscript</requirement> | 4 <requirement type="binary">Rscript</requirement> |
| 5 <requirement type="R-module">DESeq2</requirement> | 5 <requirement type="R-module">DESeq2</requirement> |
| 6 <requirement type="package" version="3.0.1">R_3_0_1</requirement> | 6 <requirement type="package" version="3.0.1">R_3_0_1</requirement> |
| 37 </command> | 37 </command> |
| 38 <stdio> | 38 <stdio> |
| 39 <regex match="Execution halted" | 39 <regex match="Execution halted" |
| 40 source="both" | 40 source="both" |
| 41 level="fatal" | 41 level="fatal" |
| 42 description="Execution halted" /> | 42 description="Execution halted." /> |
| 43 <regex match="Input-Error 01" | 43 <regex match="Input-Error 01" |
| 44 source="both" | 44 source="both" |
| 45 level="fatal" | 45 level="fatal" |
| 46 description="Error in your input parameters: Make sure you only apply factors to selected samples." /> | 46 description="Error in your input parameters: Make sure you only apply factors to selected samples." /> |
| 47 <regex match="Error in" | |
| 48 source="both" | |
| 49 level="fatal" | |
| 50 description="An undefined error occured, please check your intput carefully and contact your administrator." /> | |
| 47 </stdio> | 51 </stdio> |
| 48 <inputs> | 52 <inputs> |
| 49 <param format="tabular" name="input_matrix" type="data" label="Countmatrix" help="You can create a count matrix with the tool ..."/> | 53 <param format="tabular" name="input_matrix" type="data" label="Countmatrix" help="You can create a count matrix with the tool ..."/> |
| 50 | 54 |
| 51 <conditional name="filter_sel"> | 55 <conditional name="filter_sel"> |