# HG changeset patch # User bgruening # Date 1391539584 18000 # Node ID 3daf197399a25fa2e1369a7ab06998b416170867 Uploaded diff -r 000000000000 -r 3daf197399a2 Galaxy-Workflow-1_BAM_file_--_(clustered)_Heatmap_of_read_coverages.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-1_BAM_file_--_(clustered)_Heatmap_of_read_coverages.ga Tue Feb 04 13:46:24 2014 -0500 @@ -0,0 +1,262 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "1 BAM file from D.melanogaster will be normalized to 1x sequencing depth and a heatmap can be generated for a user-specified BED file (with genes being scaled to a length of 1.5kb)", + "format-version": "0.1", + "name": "1 BAM file -->(clustered) Heatmap of read coverages", + "steps": { + "0": { + "annotation": "sorted BAM file, e.g. Input from Data Library", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "sorted BAM file, e.g. Input from Data Library", + "name": "file of mapped reads" + } + ], + "name": "Input 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Otherwise this workflow will fail.", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "The BED file MUST have 6 columns. 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for Galaxy, in work leading to a scientific publication, +please cite: + +{publication under review} + + +Availability +============ + +This workflow is available on the main Galaxy Tool Shed: + +http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_workflows + +Development is being done on github: + +https://github.com/fidelram/deepTools + + +Dependencies +============ + +These dependencies should be resolved automatically via the Galaxy Tool Shed: + +* http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools diff -r 000000000000 -r 3daf197399a2 repository_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Tue Feb 04 13:46:24 2014 -0500 @@ -0,0 +1,4 @@ + + + +