# HG changeset patch
# User bgruening
# Date 1644573225 0
# Node ID 6f2e93384b40c491abe96ebba008294221ee14a2
# Parent  5a7481dc8943018d41fcb404c97096a821ea71c6
"planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit ac42d29c298c026aa0c53c9db2553087ebc86b97"

diff -r 5a7481dc8943 -r 6f2e93384b40 deepTools_macros.xml
--- a/deepTools_macros.xml	Fri Jan 24 07:48:18 2020 +0000
+++ b/deepTools_macros.xml	Fri Feb 11 09:53:45 2022 +0000
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.3.2.0</token>
+    <token name="@WRAPPER_VERSION@">3.5.1.0</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.3.2">deeptools</requirement>
+            <requirement type="package" version="3.5.1">deeptools</requirement>
             <requirement type="package" version="1.9">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
diff -r 5a7481dc8943 -r 6f2e93384b40 repository_dependencies.xml
--- a/repository_dependencies.xml	Fri Jan 24 07:48:18 2020 +0000
+++ b/repository_dependencies.xml	Fri Feb 11 09:53:45 2022 +0000
@@ -1,4 +1,4 @@
 <?xml version="1.0" ?>
 <repositories>
-    <repository changeset_revision="b640d79b49cb" name="data_manager_twobit_builder" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository name="data_manager_twobit_builder" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b640d79b49cb"/>
 </repositories>
\ No newline at end of file
diff -r 5a7481dc8943 -r 6f2e93384b40 test-data/bamPEFragmentSize_result1.txt
--- a/test-data/bamPEFragmentSize_result1.txt	Fri Jan 24 07:48:18 2020 +0000
+++ b/test-data/bamPEFragmentSize_result1.txt	Fri Feb 11 09:53:45 2022 +0000
@@ -12,7 +12,7 @@
 Max.: 251.0
 Std: 4.496912521077347
 MAD: 1.0
-Len. 10%: 241.20000000000002
+Len. 10%: 241.2
 Len. 20%: 241.4
 Len. 30%: 241.6
 Len. 40%: 241.8
diff -r 5a7481dc8943 -r 6f2e93384b40 test-data/bamPEFragmentSize_table1.txt
--- a/test-data/bamPEFragmentSize_table1.txt	Fri Jan 24 07:48:18 2020 +0000
+++ b/test-data/bamPEFragmentSize_table1.txt	Fri Feb 11 09:53:45 2022 +0000
@@ -1,2 +1,2 @@
 	Frag. Sampled	Frag. Len. Min.	Frag. Len. 1st. Qu.	Frag. Len. Mean	Frag. Len. Median	Frag. Len. 3rd Qu.	Frag. Len. Max	Frag. Len. Std.	Frag. Med. Abs. Dev.	Frag. Len. 10%	Frag. Len. 20%	Frag. Len. 30%	Frag. Len. 40%	Frag. Len. 60%	Frag. Len. 70%	Frag. Len. 80%	Frag. Len. 90%	Frag. Len. 99%	Reads Sampled	Read Len. Min.	Read Len. 1st. Qu.	Read Len. Mean	Read Len. Median	Read Len. 3rd Qu.	Read Len. Max	Read Len. Std.	Read Med. Abs. Dev.	Read Len. 10%	Read Len. 20%	Read Len. 30%	Read Len. 40%	Read Len. 60%	Read Len. 70%	Read Len. 80%	Read Len. 90%	Read Len. 99%
-bowtie2 test1.bam	3	241.0	241.5	244.66666666666666	242.0	246.5	251.0	4.496912521077347	1.0	241.20000000000002	241.4	241.6	241.8	243.8	245.6	247.4	249.2	250.82	3	251.0	251.0	251.0	251.0	251.0	251.0	0.0	0.0	251.0	251.0	251.0	251.0	251.0	251.0	251.0	251.0	251.0
+bowtie2 test1.bam	3	241.0	241.5	244.66666666666666	242.0	246.5	251.0	4.496912521077347	1.0	241.2	241.4	241.6	241.8	243.8	245.6	247.4	249.2	250.82	3	251.0	251.0	251.0	251.0	251.0	251.0	0.0	0.0	251.0	251.0	251.0	251.0	251.0	251.0	251.0	251.0	251.0
diff -r 5a7481dc8943 -r 6f2e93384b40 test-data/plotFingerprint_quality_metrics.tabular
--- a/test-data/plotFingerprint_quality_metrics.tabular	Fri Jan 24 07:48:18 2020 +0000
+++ b/test-data/plotFingerprint_quality_metrics.tabular	Fri Feb 11 09:53:45 2022 +0000
@@ -1,3 +1,3 @@
 Sample	AUC	Synthetic AUC	X-intercept	Synthetic X-intercept	Elbow Point	Synthetic Elbow Point	JS Distance	Synthetic JS Distance	% genome enriched	diff. enrichment	CHANCE divergence
-bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	NA	0.26900449806812143	NA	NA	NA
-bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	0.0	0.26900449806812143	0	0	0
+bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	nan	0.2690044980681214	nan	nan	nan
+bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	0.0	0.2690044980681214	0	0	0
diff -r 5a7481dc8943 -r 6f2e93384b40 test-data/plotPCA_result2.tabular
--- a/test-data/plotPCA_result2.tabular	Fri Jan 24 07:48:18 2020 +0000
+++ b/test-data/plotPCA_result2.tabular	Fri Feb 11 09:53:45 2022 +0000
@@ -1,4 +1,4 @@
 #plotPCA --outFileNameData
 Component	bowtie2-test1.bam	bowtie2-test1.bam	Eigenvalue
 1	-0.7071067811865476	-0.7071067811865475	4.0
-2	-0.7071067811865475	0.7071067811865476	1.2325951644078315e-32
+2	-0.7071067811865475	0.7071067811865476	2.49319462166397e-32