# HG changeset patch # User bgruening # Date 1450873996 18000 # Node ID 4bd03b1a8da7f20b485af0532314b26c54d7aa3c # Parent c9e0396c0457077adfce2e3eb7bfa0fcd037608d planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit ae00542731230245927953207977833a0f020b69 diff -r c9e0396c0457 -r 4bd03b1a8da7 deepTools_macros.xml --- a/deepTools_macros.xml Wed Dec 23 03:59:01 2015 -0500 +++ b/deepTools_macros.xml Wed Dec 23 07:33:16 2015 -0500 @@ -40,10 +40,10 @@ - #if $plotting_type.zMin: + #if str($plotting_type.zMin) != "": --zMin $plotting_type.zMin #end if - #if $plotting_type.zMax: + #if str($plotting_type.zMax) != "": --zMax $plotting_type.zMax #end if --colorMap '$plotting_type.colorMap' @@ -107,7 +107,11 @@ + help="When this option is set, then the matrix is split into clusters using the kmeans algorithm. + Only works for data that is not grouped, otherwise only the first group will be clustered. + If more specific clustering methods are required it is advisable to save the underlying matrix and + run the clustering using other software. The plotting of the clustering may fail (Error: Segmentation fault) + if a cluster has very few members compared to the total number or regions. (default: 0 [do not cluster])."/> @@ -408,7 +412,6 @@ - @@ -456,14 +459,6 @@ - - - (( - output['showOutputSettings'] == 'yes' and - output['saveData'] is True - )) - - (( diff -r c9e0396c0457 -r 4bd03b1a8da7 static/images/plotCorrelation_galaxy_bw_heatmap_output.png Binary file static/images/plotCorrelation_galaxy_bw_heatmap_output.png has changed diff -r c9e0396c0457 -r 4bd03b1a8da7 test-data/bamCoverage_result1.bw Binary file test-data/bamCoverage_result1.bw has changed diff -r c9e0396c0457 -r 4bd03b1a8da7 test-data/bamCoverage_result2.bw Binary file test-data/bamCoverage_result2.bw has changed diff -r c9e0396c0457 -r 4bd03b1a8da7 test-data/bamCoverage_result3.bg --- a/test-data/bamCoverage_result3.bg Wed Dec 23 03:59:01 2015 -0500 +++ b/test-data/bamCoverage_result3.bg Wed Dec 23 07:33:16 2015 -0500 @@ -5,4 +5,4 @@ chrM 220 230 7690304.31 chrM 230 240 6027535.81 chrM 240 250 3325537.00 -chrM 250 260 623538.19 +chrM 250 16569 623538.2 diff -r c9e0396c0457 -r 4bd03b1a8da7 test-data/plotPCA_result1.png Binary file test-data/plotPCA_result1.png has changed diff -r c9e0396c0457 -r 4bd03b1a8da7 test-data/profiler_result2.png Binary file test-data/profiler_result2.png has changed