view plotPCA.xml @ 1:439451971446 draft

planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 4fc171a2e9d37ef865695a04ff1b12068d8fe427

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−<tool id="deeptools_plot_pca" name="plotPCA" version="@WRAPPER_VERSION@.0">
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−    <description>generating a principal component analysis (PCA) plot from bamCorrelate or bigwigCorrelate output</description>
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−    <macros>
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−        <token name="@BINARY@">plotPCA</token>
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−        <import>deepTools_macros.xml</import>
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−    </macros>
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−    <expand macro="requirements"/>
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−    <command>
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−<![CDATA[
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−        @BINARY@
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−            --corData "$corData"
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−            --plotTitle "$plotTitle"
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−            --plotFile "$outFileName"
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−            --plotFileFormat "$outFileFormat"
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−]]>
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−    </command>
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−    <inputs>
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−        <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the bamCorrelate tool"/>
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−        <expand macro="image_file_format" />
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−        <expand macro="plotTitle" />
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−    </inputs>
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−    <outputs>
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−        <expand macro="output_image_file_format" />
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−    </outputs>
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−    <tests>
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−        <test>
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−            <param name="corData" value="bamCorrelate_result2.npz" ftype="deeptools_coverage_matrix" />
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−            <param name="plotTitle" value="Test Plot" />
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−            <param name="outFileFormat" value="png" />
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−            <output name="outFileName" file="plotPCA_result1.png" compare="sim_size" delta="100" />
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−        </test>
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−    </tests>
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−    <help>
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−<![CDATA[
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−
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−**What it does**
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−
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−Tool for generating a principal component analysis (PCA)
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−plot from bamCorrelate or bigwigCorrelate output.
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−
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−-----
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−
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−@REFERENCES@
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−]]>
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−    </help>
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−    <expand macro="citations" />
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−</tool>