Mercurial > repos > bgruening > deeptools_plot_pca
view plotPCA.xml @ 9:39b7bb209165 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
author | bgruening |
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date | Tue, 19 Jan 2016 10:09:12 -0500 |
parents | c74dd623b281 |
children | f173cc2d28f9 |
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<tool id="deeptools_plot_pca" name="plotPCA" version="@WRAPPER_VERSION@.0"> <description>generate a principal component analysis (PCA) plot from multiBamCoverage or multiBigwigSummary output</description> <macros> <token name="@BINARY@">plotPCA</token> <import>deepTools_macros.xml</import> </macros> <expand macro="requirements"/> <command> <![CDATA[ @BINARY@ --corData "$corData" --plotTitle "$plotTitle" --plotFile "$outFileName" --plotFileFormat "$outFileFormat" ]]> </command> <inputs> <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the multiBamCoverage or multiBigwigSummary tools"/> <expand macro="input_image_file_format" /> <expand macro="plotTitle" /> </inputs> <outputs> <expand macro="output_image_file_format_not_nested" /> </outputs> <tests> <test> <param name="corData" value="multiBamCoverage_result2.npz" ftype="deeptools_coverage_matrix" /> <param name="plotTitle" value="Test Plot" /> <param name="outFileFormat" value="png" /> <output name="outFileName" file="plotPCA_result1.png" ftpye="png" compare="sim_size" delta="100" /> </test> </tests> <help> <![CDATA[ **What it does** Tool for generating a principal component analysis (PCA) plot from multiBamCoverage or multiBigwigSummary output. ----- @REFERENCES@ ]]> </help> <expand macro="citations" /> </tool>