comparison plotHeatmap.xml @ 10:5984ae55928f draft

planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'

9:f509604dbf06

            --matrixFile "$matrixFile"
            --outFileName "$outFileName"

            #if $output.showOutputSettings == "yes"
                --plotFileFormat "$output.outFileFormat"
                #if $outFileNameData:
                    --outFileNameData "$outFileNameData"
                #end if

                #if $outFileNameMatrix:
                    --outFileNameMatrix "$outFileNameMatrix"
                #end if

        <expand macro="output_save_matrix_values" />
    </outputs>
    <tests>
        <test>
            <param name="matrixFile" value="computeMatrix_result1.gz" ftype="deeptools_compute_matrix_archive" />
            <output name="outFileName" file="heatmapper_result1.png" ftype="png" compare="sim_size" delta="100" />
        </test>
        <test>
            <param name="matrixFile" value="computeMatrix_result1.gz" ftype="deeptools_compute_matrix_archive" />
            <param name="showAdvancedOpt" value="yes" />
            <param name="whatToShow" value="heatmap and colorbar" />
            <output name="outFileName" file="heatmapper_result2.png" ftype="png" compare="sim_size" delta="100" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**

.. image:: $PATH_TO_IMAGES/visual_hm_DmelPolII.png
   :alt: Heatmap of RNA Polymerase II ChIP-seq


You can find more details on the tool on the plotHeatmap doc page: https://deeptools.readthedocs.org/en/release-1.6/content/tools/plotHeatmap.html


-----

@REFERENCES@

10:5984ae55928f

            --matrixFile "$matrixFile"
            --outFileName "$outFileName"

            #if $output.showOutputSettings == "yes"
                --plotFileFormat "$output.outFileFormat"

                #if $outFileNameMatrix:
                    --outFileNameMatrix "$outFileNameMatrix"
                #end if

        <expand macro="output_save_matrix_values" />
    </outputs>
    <tests>
        <test>
            <param name="matrixFile" value="computeMatrix_result1.gz" ftype="deeptools_compute_matrix_archive" />
            <output name="outFileName" file="heatmapper_result1.png" ftype="png" compare="sim_size" delta="4000" />
        </test>
        <test>
            <param name="matrixFile" value="computeMatrix_result1.gz" ftype="deeptools_compute_matrix_archive" />
            <param name="showAdvancedOpt" value="yes" />
            <param name="whatToShow" value="heatmap and colorbar" />
            <output name="outFileName" file="heatmapper_result2.png" ftype="png" compare="sim_size" delta="4000" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**

.. image:: $PATH_TO_IMAGES/visual_hm_DmelPolII.png
   :alt: Heatmap of RNA Polymerase II ChIP-seq


You can find more details on the tool on the plotHeatmap doc page: https://deeptools.readthedocs.org/en/master/content/tools/plotHeatmap.html


-----

@REFERENCES@