Mercurial > repos > bgruening > deeptools_plot_enrichment
comparison plotEnrichment.xml @ 12:4039432f51fc draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit b1f975422b307927bbbe245d57609e9464d5d5c8-dirty
| author | bgruening |
|---|---|
| date | Thu, 15 Feb 2018 04:12:35 -0500 |
| parents | f8b1d1ae388e |
| children | e0be6dd1b738 |
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| 11:94b1e196492d | 12:4039432f51fc |
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| 186 This tool determines read/fragment coverage of regions. The regions (e.g., exons, genes or peaks) can be specified in one or more BED or GTF files. For GTF files, the feature type is taken from column 3. For BED files, the file name is used. For BED files, the feature labels can be changed. | 186 This tool determines read/fragment coverage of regions. The regions (e.g., exons, genes or peaks) can be specified in one or more BED or GTF files. For GTF files, the feature type is taken from column 3. For BED files, the file name is used. For BED files, the feature labels can be changed. |
| 187 | 187 |
| 188 Output | 188 Output |
| 189 -------- | 189 -------- |
| 190 | 190 |
| 191 The output file is a plot in the format specified. A table of the percentages can also be created. | 191 The output file is a plot in the format specified. A table of the percentages and raw counts can also be created. |
| 192 | 192 |
| 193 .. image:: $PATH_TO_IMAGES/plotEnrichment_output.png | 193 .. image:: $PATH_TO_IMAGES/plotEnrichment_output.png |
| 194 :width: 600 | 194 :width: 600 |
| 195 :height: 600 | 195 :height: 600 |
| 196 | 196 |