comparison plotCoverage.xml @ 1:9f2b016177e7 draft

planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 8b9cdb8dc4a8fedd2b2286e7afab6529e49a9d22-dirty

0:fd4a79e7e5f0

<tool id="deeptools_plot_coverage" name="plotCoverage" version="@WRAPPER_VERSION@.0">
    <description>creates a heatmap of correlation scores between different samples </description>
    <macros>
        <token name="@BINARY@">plotCoverage</token>
        <import>deepTools_macros.xml</import>
    </macros>
    <expand macro="requirements"/>

            --bamfiles '#echo "' '".join($files)#'
            --labels '#echo "' '".join($labels)#'
            --plotFileFormat "$outFileFormat"

            #if $outRawCounts:
                --outRawCounts '$outFileRawCounts' 
            #end if

            #if $advancedOpt.showAdvancedOpt == "yes":
                --numberOfSamples '$advancedOpt.numberOfSamples'
                $advancedOpt.skipZeros

1:9f2b016177e7

<tool id="deeptools_plot_coverage" name="plotCoverage" version="@WRAPPER_VERSION@.0">
    <description>plots a histogram of coverage on genomic regions </description>
    <macros>
        <token name="@BINARY@">plotCoverage</token>
        <import>deepTools_macros.xml</import>
    </macros>
    <expand macro="requirements"/>

            --bamfiles '#echo "' '".join($files)#'
            --labels '#echo "' '".join($labels)#'
            --plotFileFormat "$outFileFormat"

            #if $outRawCounts:
                --outRawCounts '$outFileRawCounts'
            #end if

            #if $advancedOpt.showAdvancedOpt == "yes":
                --numberOfSamples '$advancedOpt.numberOfSamples'
                $advancedOpt.skipZeros