Mercurial > repos > bgruening > deeptools_plot_coverage
comparison plotCoverage.xml @ 15:582a05c586ba draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 43d23f495200449aec91a41fd537603014aa93ba-dirty
| author | bgruening |
|---|---|
| date | Sun, 24 Apr 2016 14:47:45 -0400 |
| parents | 752d2d85e6af |
| children | 4e9fb57c5e7d |
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| 14:8fefd05b0e3f | 15:582a05c586ba |
|---|---|
| 15 @BINARY@ | 15 @BINARY@ |
| 16 | 16 |
| 17 @THREADS@ | 17 @THREADS@ |
| 18 | 18 |
| 19 --plotFile '$outFileName' | 19 --plotFile '$outFileName' |
| 20 --bamfiles '#echo "' '".join($files)#' | 20 --bamfiles #echo " ".join($files)# |
| 21 --labels '#echo "' '".join($labels)#' | 21 --labels #echo " ".join($labels)# |
| 22 --plotFileFormat "$outFileFormat" | 22 --plotFileFormat "$outFileFormat" |
| 23 | 23 |
| 24 #if $outRawCounts: | 24 #if $outRawCounts: |
| 25 --outRawCounts '$outFileRawCounts' | 25 --outRawCounts '$outFileRawCounts' |
| 26 #end if | 26 #end if |
| 74 <filter>outRawCounts is True</filter> | 74 <filter>outRawCounts is True</filter> |
| 75 </data> | 75 </data> |
| 76 </outputs> | 76 </outputs> |
| 77 <tests> | 77 <tests> |
| 78 <test> | 78 <test> |
| 79 <param name="bamfiles" value="bowtie2-test1.bam,bowtie2-test1.bam" ftype="bam" /> | 79 <param name="bamfiles" value="bowtie2 test1.bam,bowtie2 test1.bam" ftype="bam" /> |
| 80 <!--param name="outFileFormat" value="png" /--> | 80 <!--param name="outFileFormat" value="png" /--> |
| 81 <param name="showAdvancedOpt" value="yes" /> | 81 <param name="showAdvancedOpt" value="yes" /> |
| 82 <param name="plotTitle" value="Test Title from Galaxy" /> | 82 <param name="plotTitle" value="Test Title from Galaxy" /> |
| 83 <param name="outRawCounts" value="True" /> | 83 <param name="outRawCounts" value="True" /> |
| 84 <output name="outFileRawCounts" file="plotCoverage_result1.tabular" ftype="tabular" /> | 84 <output name="outFileRawCounts" file="plotCoverage_result1.tabular" ftype="tabular" /> |
| 85 <output name="outFileName" file="plotCoverage_result1.png" ftype="png" compare="sim_size" delta="2200" /> | 85 <output name="outFileName" file="plotCoverage_result1.png" ftype="png" compare="sim_size" delta="2400" /> |
| 86 </test> | 86 </test> |
| 87 </tests> | 87 </tests> |
| 88 <help> | 88 <help> |
| 89 <![CDATA[ | 89 <![CDATA[ |
| 90 What it does | 90 What it does |