diff plotCorrelation.xml @ 36:659b08d0c4b1 draft

planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3024062b63fdc502b46e4f328083493c2274182a

--- a/plotCorrelation.xml	Thu Apr 05 10:40:20 2018 -0400
+++ b/plotCorrelation.xml	Tue Aug 21 16:32:50 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="deeptools_plot_correlation" name="plotCorrelation" version="@WRAPPER_VERSION@.0">
+<tool id="deeptools_plot_correlation" name="plotCorrelation" version="@WRAPPER_VERSION@.0" profile="18.01">
     <description>Create a heatmap or scatterplot of correlation scores between different samples </description>
     <macros>
         <token name="@BINARY@">plotCorrelation</token>
@@ -18,8 +18,11 @@
                 --plotHeight $plotting_type.plotHeight
             #else:
                 --plotTitle '$plotting_type.plotTitle'
-                #if str($plotting_type.maxRange) != '':
-                    --maxRange '$plotting_type.maxRange'
+                #if str($plotting_type.xRange) != '':
+                    --xRange '$plotting_type.xRange'
+                #end if
+                #if str($plotting_type.yRange) != '':
+                    --yRange '$plotting_type.yRange'
                 #end if
                 $plotting_type.log1p
             #end if
@@ -47,9 +50,12 @@
             </when>
             <when value="scatterplot">
                 <expand macro="plotTitle" />
-                <param argument="--maxRange" type="integer" value="" optional="true"
-                    label="Maximum Range"
-                    help="Maximum (integer) value for the X and Y axes. The default scales these such that the full range of dots is displayed. If you specify --log1p, please ensure that this value is within the range it will produce." />
+                <param argument="--xRange" type="text" value="" optional="true"
+                    label="X axis range"
+                    help="X axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." />
+                <param argument="--yRange" type="text" value="" optional="true"
+                    label="Y axis range"
+                    help="Y axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." />
                 <param argument="--log1p" type="boolean" truevalue="--log1p" falsevalue=""
                     label="Log transform"
                     help="Plot the natural log of the scatter plot after adding 1. Note that this is ONLY for plotting, the correlation is unaffected." />