Mercurial > repos > bgruening > deeptools_plot_correlation
comparison plotCorrelation.xml @ 29:b12eb8b54b45 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b5fc4073c884a2d6a4092ea85150db1971010f28
| author | bgruening |
|---|---|
| date | Sun, 14 May 2017 18:42:01 -0400 |
| parents | cf1409a29f50 |
| children | f1518335ac27 |
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| 28:3c5197200bbf | 29:b12eb8b54b45 |
|---|---|
| 12 --plotFile "$outFileName" | 12 --plotFile "$outFileName" |
| 13 --corMethod "$corMethod" | 13 --corMethod "$corMethod" |
| 14 --whatToPlot "$plotting_type.whatToPlot" | 14 --whatToPlot "$plotting_type.whatToPlot" |
| 15 #if str($plotting_type.whatToPlot) == 'heatmap': | 15 #if str($plotting_type.whatToPlot) == 'heatmap': |
| 16 @HEATMAP_OPTIONS@ | 16 @HEATMAP_OPTIONS@ |
| 17 --plotWidth $plotting_type.plotWidth | |
| 18 --plotHeight $plotting_type.plotHeight | |
| 17 #else: | 19 #else: |
| 18 --plotTitle '$plotting_type.plotTitle' | 20 --plotTitle '$plotting_type.plotTitle' |
| 19 #end if | 21 #end if |
| 20 $skipZeros | 22 $skipZeros |
| 21 --plotFileFormat "$outFileFormat" | 23 --plotFileFormat "$outFileFormat" |
| 35 <option value="heatmap" selected="True">Heatmap</option> | 37 <option value="heatmap" selected="True">Heatmap</option> |
| 36 <option value="scatterplot">Scatterplot</option> | 38 <option value="scatterplot">Scatterplot</option> |
| 37 </param> | 39 </param> |
| 38 <when value="heatmap"> | 40 <when value="heatmap"> |
| 39 <expand macro="heatmap_options" /> | 41 <expand macro="heatmap_options" /> |
| 42 <expand macro="plotWidthHeight" PLOTWIDTH="11.0" PLOTHEIGHT="9.5" /> | |
| 40 </when> | 43 </when> |
| 41 <when value="scatterplot"> | 44 <when value="scatterplot"> |
| 42 <expand macro="plotTitle" /> | 45 <expand macro="plotTitle" /> |
| 43 </when> | 46 </when> |
| 44 </conditional> | 47 </conditional> |