# HG changeset patch
# User bgruening
# Date 1461522774 14400
# Node ID dd46b5d1882cc4e5937980ed8db74646bd7e03d9
# Parent 44bf05f89ccf05959e5da93cfbc2e1cf39ad4833
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 43d23f495200449aec91a41fd537603014aa93ba-dirty
diff -r 44bf05f89ccf -r dd46b5d1882c deepTools_macros.xml
--- a/deepTools_macros.xml Fri Mar 18 08:34:07 2016 -0400
+++ b/deepTools_macros.xml Sun Apr 24 14:32:54 2016 -0400
@@ -68,16 +68,22 @@
+ help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000".">
+
+
+
+
+
+
--numberOfProcessors "\${GALAXY_SLOTS:-4}"
- 2.2.2
+ 2.2.3
python
@BINARY@
- deepTools
+ deepTools
@@ -302,7 +308,7 @@
- 10.1093/nar/gku365
+ 10.1093/nar/gkw257
diff -r 44bf05f89ccf -r dd46b5d1882c multiBigwigSummary.xml
--- a/multiBigwigSummary.xml Fri Mar 18 08:34:07 2016 -0400
+++ b/multiBigwigSummary.xml Sun Apr 24 14:32:54 2016 -0400
@@ -18,8 +18,8 @@
@THREADS@
--outFileName $outFile
- --bwfiles '#echo "' '".join($files)#'
- --labels '#echo "' '".join($labels)#'
+ --bwfiles #echo " ".join($files)#
+ --labels #echo " ".join($labels)#
#if $outRawCounts:
--outRawCounts '$outFileRawCounts'
diff -r 44bf05f89ccf -r dd46b5d1882c test-data/bowtie2 test1.bam
Binary file test-data/bowtie2 test1.bam has changed
diff -r 44bf05f89ccf -r dd46b5d1882c test-data/bowtie2-test1.bam
Binary file test-data/bowtie2-test1.bam has changed
diff -r 44bf05f89ccf -r dd46b5d1882c test-data/plotCoverage_result1.tabular
--- a/test-data/plotCoverage_result1.tabular Fri Mar 18 08:34:07 2016 -0400
+++ b/test-data/plotCoverage_result1.tabular Sun Apr 24 14:32:54 2016 -0400
@@ -1,4 +1,4 @@
-#'chr' 'start' 'end' 'bowtie2-test1.bam' 'bowtie2-test1.bam'
+#'chr' 'start' 'end' 'bowtie2 test1.bam' 'bowtie2 test1.bam'
chrM 0 1 23.0 23.0
chrM 1 2 35.0 35.0
chrM 2 3 35.0 35.0
diff -r 44bf05f89ccf -r dd46b5d1882c test-data/plotFingerprint_result2.tabular
--- a/test-data/plotFingerprint_result2.tabular Fri Mar 18 08:34:07 2016 -0400
+++ b/test-data/plotFingerprint_result2.tabular Sun Apr 24 14:32:54 2016 -0400
@@ -1,4 +1,4 @@
-'bowtie2-test1.bam' 'bowtie2-test1.bam'
+'bowtie2 test1.bam' 'bowtie2 test1.bam'
68 68
65 65
61 61