Mercurial > repos > bgruening > deeptools_multi_bam_summary
diff multiBamSummary.xml @ 8:3c94b764e274 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 43d23f495200449aec91a41fd537603014aa93ba-dirty
author | bgruening |
---|---|
date | Sun, 24 Apr 2016 14:18:52 -0400 |
parents | 41c2e05aa70c |
children | 024e6f9762af |
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--- a/multiBamSummary.xml Fri Mar 18 08:32:56 2016 -0400 +++ b/multiBamSummary.xml Sun Apr 24 14:18:52 2016 -0400 @@ -16,8 +16,8 @@ @THREADS@ --outFileName '$outFile' - --bamfiles '#echo "' '".join($files)#' - --labels '#echo "' '".join($labels)#' + --bamfiles #echo " ".join($files)# + --labels #echo " ".join($labels)# #if $outRawCounts: --outRawCounts '$outFileRawCounts' @@ -85,13 +85,13 @@ </outputs> <tests> <test> - <param name="bamfiles" value="bowtie2-test1.bam,bowtie2-test1.bam" ftype="bam" /> + <param name="bamfiles" value="bowtie2 test1.bam,bowtie2 test1.bam" ftype="bam" /> <param name="modeOpt" value="bins" /> <param name="binSize" value="10" /> <output name="outFile" file="multiBamSummary_result1.npz" ftype="deeptools_coverage_matrix" compare="sim_size" /> </test> <test> - <param name="bamfiles" value="bowtie2-test1.bam,bowtie2-test1.bam" ftype="bam" /> + <param name="bamfiles" value="bowtie2 test1.bam,bowtie2 test1.bam" ftype="bam" /> <param name="modeOpt" value="BED-file" /> <param name="region_file" value="multiBamSummary_regions.bed" /> <output name="outFile" file="multiBamSummary_result2.npz" ftype="deeptools_coverage_matrix" compare="sim_size" />