# HG changeset patch
# User bgruening
# Date 1457562692 18000
# Node ID eb5c587f5fc75690900d3806c001c1256dd5d741
# Parent  7171fd954356b7da9b54117865c22706dfa05372
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c

diff -r 7171fd954356 -r eb5c587f5fc7 correctGCBias.xml
--- a/correctGCBias.xml	Thu Feb 18 11:36:50 2016 -0500
+++ b/correctGCBias.xml	Wed Mar 09 17:31:32 2016 -0500
@@ -32,7 +32,7 @@
     <inputs>
         <param argument="--GCbiasFrequenciesFile" type="data" format="tabular" label="Output of computeGCBias" help="" />
         <param argument="--bamInput" format="bam" type="data"
-            label="BAM file" help="This should be same file that was used for computeGCbias. The BAM file must be sorted." />
+            label="BAM file" help="This should be same file that was used for computeGCbias." />
         <expand macro="reference_genome_source" />
         <expand macro="effectiveGenomeSize" />
         <expand macro="region_limit_operation" />
diff -r 7171fd954356 -r eb5c587f5fc7 deepTools_macros.xml
--- a/deepTools_macros.xml	Thu Feb 18 11:36:50 2016 -0500
+++ b/deepTools_macros.xml	Wed Mar 09 17:31:32 2016 -0500
@@ -72,12 +72,12 @@
     </xml>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">2.1.0</token>
+    <token name="@WRAPPER_VERSION@">2.2.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="2.7.10">python</requirement>
             <requirement type="binary">@BINARY@</requirement>
-            <requirement type="package" version="2.1.0">deepTools</requirement>
+            <requirement type="package" version="2.2.2">deepTools</requirement>
             <yield />
         </requirements>
         <expand macro="stdio" />
@@ -310,13 +310,13 @@
     <xml name="multiple_input_bams">
         <param argument="--bamfiles" type="data" format="bam" min="1"
             label="Bam file" multiple="true"
-            help="The BAM file must be sorted."/>
+            help=""/>
     </xml>
 
     <xml name="multiple_input_bams_min2">
         <param argument="--bamfiles" type="data" format="bam" min="2"
             label="Bam file" multiple="true"
-            help="The BAM file must be sorted."/>
+            help=""/>
     </xml>
 
     <xml name="multiple_input_bigwigs">
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/bamCoverage_result5.bw
Binary file test-data/bamCoverage_result5.bw has changed
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/computeMatrix_result1.gz
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diff -r 7171fd954356 -r eb5c587f5fc7 test-data/computeMatrix_result2.gz
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diff -r 7171fd954356 -r eb5c587f5fc7 test-data/computeMatrix_result3.gz
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diff -r 7171fd954356 -r eb5c587f5fc7 test-data/heatmapper_result1.png
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diff -r 7171fd954356 -r eb5c587f5fc7 test-data/heatmapper_result2.png
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diff -r 7171fd954356 -r eb5c587f5fc7 test-data/heatmapper_result2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/heatmapper_result2.tabular	Wed Mar 09 17:31:32 2016 -0500
@@ -0,0 +1,3 @@
+bin labels		-0.0Kb	0.0Kb
+bins		1	2
+file_0	genes	2477942.34473	2610259.65234
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/plotCorrelation_result1.png
Binary file test-data/plotCorrelation_result1.png has changed
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/plotCoverage_result1.png
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diff -r 7171fd954356 -r eb5c587f5fc7 test-data/plotPCA_result1.png
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diff -r 7171fd954356 -r eb5c587f5fc7 test-data/plotPCA_result2.png
Binary file test-data/plotPCA_result2.png has changed
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/plotPCA_result2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/plotPCA_result2.tabular	Wed Mar 09 17:31:32 2016 -0500
@@ -0,0 +1,3 @@
+Component	bowtie2-test1.bam	bowtie2-test1.bam	Eigenvalue
+1	-0.707106781187	-0.707106781187	6.0
+2	-0.707106781187	0.707106781187	1.23259516441e-32
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/profiler_result1.png
Binary file test-data/profiler_result1.png has changed
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/profiler_result2.png
Binary file test-data/profiler_result2.png has changed
diff -r 7171fd954356 -r eb5c587f5fc7 test-data/profiler_result2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/profiler_result2.tabular	Wed Mar 09 17:31:32 2016 -0500
@@ -0,0 +1,3 @@
+bin labels		-0.0Kb	0.0Kb
+bins		1	2
+file_0	genes	2477942.34473	2610259.65234