# HG changeset patch # User bgruening # Date 1644571210 0 # Node ID 809c672b0c7c96f3ad181c68eefc54c48951ba94 # Parent 4ec83675c6fbfd805c0ab5c0e0c65d01ccc335bf "planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit ac42d29c298c026aa0c53c9db2553087ebc86b97" diff -r 4ec83675c6fb -r 809c672b0c7c deepTools_macros.xml --- a/deepTools_macros.xml Fri Jan 24 09:35:12 2020 +0000 +++ b/deepTools_macros.xml Fri Feb 11 09:20:10 2022 +0000 @@ -1,10 +1,10 @@ --numberOfProcessors "\${GALAXY_SLOTS:-4}" - 3.3.2.0 + 3.5.1.0 - deeptools + deeptools samtools diff -r 4ec83675c6fb -r 809c672b0c7c repository_dependencies.xml --- a/repository_dependencies.xml Fri Jan 24 09:35:12 2020 +0000 +++ b/repository_dependencies.xml Fri Feb 11 09:20:10 2022 +0000 @@ -1,4 +1,4 @@ - + \ No newline at end of file diff -r 4ec83675c6fb -r 809c672b0c7c test-data/bamPEFragmentSize_result1.txt --- a/test-data/bamPEFragmentSize_result1.txt Fri Jan 24 09:35:12 2020 +0000 +++ b/test-data/bamPEFragmentSize_result1.txt Fri Feb 11 09:20:10 2022 +0000 @@ -12,7 +12,7 @@ Max.: 251.0 Std: 4.496912521077347 MAD: 1.0 -Len. 10%: 241.20000000000002 +Len. 10%: 241.2 Len. 20%: 241.4 Len. 30%: 241.6 Len. 40%: 241.8 diff -r 4ec83675c6fb -r 809c672b0c7c test-data/bamPEFragmentSize_table1.txt --- a/test-data/bamPEFragmentSize_table1.txt Fri Jan 24 09:35:12 2020 +0000 +++ b/test-data/bamPEFragmentSize_table1.txt Fri Feb 11 09:20:10 2022 +0000 @@ -1,2 +1,2 @@ Frag. Sampled Frag. Len. Min. Frag. Len. 1st. Qu. Frag. Len. Mean Frag. Len. Median Frag. Len. 3rd Qu. Frag. Len. Max Frag. Len. Std. Frag. Med. Abs. Dev. Frag. Len. 10% Frag. Len. 20% Frag. Len. 30% Frag. Len. 40% Frag. Len. 60% Frag. Len. 70% Frag. Len. 80% Frag. Len. 90% Frag. Len. 99% Reads Sampled Read Len. Min. Read Len. 1st. Qu. Read Len. Mean Read Len. Median Read Len. 3rd Qu. Read Len. Max Read Len. Std. Read Med. Abs. Dev. Read Len. 10% Read Len. 20% Read Len. 30% Read Len. 40% Read Len. 60% Read Len. 70% Read Len. 80% Read Len. 90% Read Len. 99% -bowtie2 test1.bam 3 241.0 241.5 244.66666666666666 242.0 246.5 251.0 4.496912521077347 1.0 241.20000000000002 241.4 241.6 241.8 243.8 245.6 247.4 249.2 250.82 3 251.0 251.0 251.0 251.0 251.0 251.0 0.0 0.0 251.0 251.0 251.0 251.0 251.0 251.0 251.0 251.0 251.0 +bowtie2 test1.bam 3 241.0 241.5 244.66666666666666 242.0 246.5 251.0 4.496912521077347 1.0 241.2 241.4 241.6 241.8 243.8 245.6 247.4 249.2 250.82 3 251.0 251.0 251.0 251.0 251.0 251.0 0.0 0.0 251.0 251.0 251.0 251.0 251.0 251.0 251.0 251.0 251.0 diff -r 4ec83675c6fb -r 809c672b0c7c test-data/plotFingerprint_quality_metrics.tabular --- a/test-data/plotFingerprint_quality_metrics.tabular Fri Jan 24 09:35:12 2020 +0000 +++ b/test-data/plotFingerprint_quality_metrics.tabular Fri Feb 11 09:20:10 2022 +0000 @@ -1,3 +1,3 @@ Sample AUC Synthetic AUC X-intercept Synthetic X-intercept Elbow Point Synthetic Elbow Point JS Distance Synthetic JS Distance % genome enriched diff. enrichment CHANCE divergence -bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 NA 0.26900449806812143 NA NA NA -bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 0.0 0.26900449806812143 0 0 0 +bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 nan 0.2690044980681214 nan nan nan +bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 0.0 0.2690044980681214 0 0 0 diff -r 4ec83675c6fb -r 809c672b0c7c test-data/plotPCA_result2.tabular --- a/test-data/plotPCA_result2.tabular Fri Jan 24 09:35:12 2020 +0000 +++ b/test-data/plotPCA_result2.tabular Fri Feb 11 09:20:10 2022 +0000 @@ -1,4 +1,4 @@ #plotPCA --outFileNameData Component bowtie2-test1.bam bowtie2-test1.bam Eigenvalue 1 -0.7071067811865476 -0.7071067811865475 4.0 -2 -0.7071067811865475 0.7071067811865476 1.2325951644078315e-32 +2 -0.7071067811865475 0.7071067811865476 2.49319462166397e-32