comparison deepTools_macros.xml @ 11:d6fdc9c0c4ee draft

planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee

10:b8d1df03dc63

            label="Region of the genome to limit the operation to"
            help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." />
    </xml>

    <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
    <token name="@WRAPPER_VERSION@">2.0.0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="2.7.10">python</requirement>
            <requirement type="binary">@BINARY@</requirement>
            <requirement type="package" version="2.0">deepTools</requirement>
            <yield />
        </requirements>
        <expand macro="stdio" />
        <version_command>@BINARY@ --version</version_command>
    </xml>

    </xml>

    <xml name="distanceBetweenBins">
        <param argument="--distanceBetweenBins" type="integer" value="0" min="0"
            label="Distance between bins"
            help="By default, multiBamCoverage considers consecutive bins of
                the specified 'Bin size'. However, to reduce the
                computation time, a larger distance between bins can
                be given. Larger distances result in fewer bins being
                considered."/>
    </xml>

11:d6fdc9c0c4ee

            label="Region of the genome to limit the operation to"
            help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." />
    </xml>

    <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
    <token name="@WRAPPER_VERSION@">2.0.1.0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="2.7.10">python</requirement>
            <requirement type="binary">@BINARY@</requirement>
            <requirement type="package" version="2.0.1">deepTools</requirement>
            <yield />
        </requirements>
        <expand macro="stdio" />
        <version_command>@BINARY@ --version</version_command>
    </xml>

    </xml>

    <xml name="distanceBetweenBins">
        <param argument="--distanceBetweenBins" type="integer" value="0" min="0"
            label="Distance between bins"
            help="By default, multiBamSummary considers consecutive bins of
                the specified 'Bin size'. However, to reduce the
                computation time, a larger distance between bins can
                be given. Larger distances result in fewer bins being
                considered."/>
    </xml>