# HG changeset patch # User bgruening # Date 1453748840 18000 # Node ID bbfcc5bbb3dbb91acc0423ee976563219a7f9535 # Parent 841e0304c087211eb5d66f2de0413ac69e4a65ac planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee diff -r 841e0304c087 -r bbfcc5bbb3db deepTools_macros.xml --- a/deepTools_macros.xml Thu Jan 21 09:57:48 2016 -0500 +++ b/deepTools_macros.xml Mon Jan 25 14:07:20 2016 -0500 @@ -72,12 +72,12 @@ </xml> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">2.0.0</token> + <token name="@WRAPPER_VERSION@">2.0.1.0</token> <xml name="requirements"> <requirements> <requirement type="package" version="2.7.10">python</requirement> <requirement type="binary">@BINARY@</requirement> - <requirement type="package" version="2.0">deepTools</requirement> + <requirement type="package" version="2.0.1">deepTools</requirement> <yield /> </requirements> <expand macro="stdio" /> @@ -185,7 +185,7 @@ <xml name="distanceBetweenBins"> <param argument="--distanceBetweenBins" type="integer" value="0" min="0" label="Distance between bins" - help="By default, multiBamCoverage considers consecutive bins of + help="By default, multiBamSummary considers consecutive bins of the specified 'Bin size'. However, to reduce the computation time, a larger distance between bins can be given. Larger distances result in fewer bins being diff -r 841e0304c087 -r bbfcc5bbb3db static/images/QC_multiBamCoverage_humanSamples.png Binary file static/images/QC_multiBamCoverage_humanSamples.png has changed diff -r 841e0304c087 -r bbfcc5bbb3db static/images/QC_multiBamSummary_humanSamples.png Binary file static/images/QC_multiBamSummary_humanSamples.png has changed diff -r 841e0304c087 -r bbfcc5bbb3db test-data/multiBamCoverage_regions.bed --- a/test-data/multiBamCoverage_regions.bed Thu Jan 21 09:57:48 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -chrM 1 10 -chrM 5 15 -chrM 10 20 diff -r 841e0304c087 -r bbfcc5bbb3db test-data/multiBamCoverage_result1.npz Binary file test-data/multiBamCoverage_result1.npz has changed diff -r 841e0304c087 -r bbfcc5bbb3db test-data/multiBamCoverage_result2.npz Binary file test-data/multiBamCoverage_result2.npz has changed diff -r 841e0304c087 -r bbfcc5bbb3db test-data/multiBamSummary_regions.bed --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/multiBamSummary_regions.bed Mon Jan 25 14:07:20 2016 -0500 @@ -0,0 +1,3 @@ +chrM 1 10 +chrM 5 15 +chrM 10 20 diff -r 841e0304c087 -r bbfcc5bbb3db test-data/multiBamSummary_result1.npz Binary file test-data/multiBamSummary_result1.npz has changed diff -r 841e0304c087 -r bbfcc5bbb3db test-data/multiBamSummary_result2.npz Binary file test-data/multiBamSummary_result2.npz has changed diff -r 841e0304c087 -r bbfcc5bbb3db tool_dependencies.xml --- a/tool_dependencies.xml Thu Jan 21 09:57:48 2016 -0500 +++ b/tool_dependencies.xml Mon Jan 25 14:07:20 2016 -0500 @@ -3,7 +3,7 @@ <package name="python" version="2.7.10"> <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="deepTools" version="2.0"> - <repository changeset_revision="1702876fa731" name="package_python_2_7_deeptools_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="deepTools" version="2.0.1"> + <repository changeset_revision="cf58f07730a8" name="package_python_2_7_deeptools_2_0_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>